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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCTTGAGAAAGTTTGTAAAGATCCCCAGATGCTTGTTGACATATATGTGAACTATGATTGTGATCTTGAGGCCCCAAACTTGTTTGAGCGCATGgtataatctaacatattattgcattataatgtttatttgttgataggttctgcttgattctcttggatatatctcaaacgaatccattttgccttcttatcatttag

Basic information

species Vitis vinifera
transcript Vv11s0016g00170.t01
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g00170.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GRMZM2G335287_T01 (Zea mays), 5'ss of exon 14
GATGCTTGAGAAAGTTTGTAAAGATCCCCAGATGCTTGTTGACATATATGTGAACTATGATTGTGATCTTGAGGCCCCAAACTTGTTTGAGCGCATGgt----ataatcta-acatattattgcattataatgttt-atttgttgataggttctgcttgattctcttggatatatctcaaacgaatccattttgccttcttatcatttag
|||| | ||||||||||| ||||||||||| |||||||  ||  | | |||||||||||| |||||||||||||  |||||  | ||||| |||| |||    ||| | |  | || |      |  |||   | | | ||  | |||   | || ||  |||| | |  |  | | ||   || |     |     || || ||     
GATGTTGGAGAAAGTTTGCAAAGATCCCCAAATGCTTGCAGATGTGTTTGTGAACTATGACTGTGATCTTGAGGGACCAAATCTTTTTGAACGCACGgtaatcatattttttaaatgtccagaaaacatagcttctgaatttctcataaaatgtgtttttttctttggcttgcaacacatctgactgataatctatctcctaccag----

upper sequence: Vv11s0016g00170.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA13G17610.1 (Glycine max), 5'ss of exon 16
GATGCTTGAGAAAGTTTGTAAAGATCCCCAGATGCTTGTTGACATATATGTGAACTATGATTGTGATCTTGAGGCCCCAAACTTGTTTGAGCGCATGgtataatctaacatattattgcattataatgtt-tatttgttgataggttctgcttgattctcttggatatatctcaaacgaatccattttgccttcttat-catttag---
|||| | |||||||| ||||| ||||| ||||||||||||||||| | |||||| |||||||||||||||||||| |||||||||||||| || ||||||| |||| ||| |  | |   ||||    || ||             |  | |     ||||| | || || | | |  ||||  | ||   ||| ||| || || |   
GATGTTAGAGAAAGTATGTAAGGATCCACAGATGCTTGTTGACATCTTTGTGAATTATGATTGTGATCTTGAGGCACCAAACTTGTTTGAACGAATGgtattatcttacagagcaatcttttatggcattatagacagcatgtaaattagttatgacctctttggtaaatataataataatctctgttattttcctattcaatttgtag

upper sequence: Vv11s0016g00170.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA17G04890.1 (Glycine max), 5'ss of exon 16
GATGCTTGAGAAAGTTTGTAAAGATCCCCAGATGCTTGTTGACATATATGTGAACTATGATTGTGATCTTGAGGCCCCAAACTTGTTTGAGCGCATGgtataatctaacatattattgcattataatgtt-tatttgttgataggttctgcttgattctcttggatatatctcaaacgaatccattttgccttcttat-catttag---
|||| | |||||||| ||||| || || ||||||||||||||||| | |||||| |||||||||||||||||||| |||||||||||||| || ||||||| |||| ||| |  | |   ||||    || ||         |   |  | |   | ||||| | || || | | |  ||||  | ||   |||  || || || |   
GATGTTAGAGAAAGTATGTAAGGACCCACAGATGCTTGTTGACATCTTTGTGAATTATGATTGTGATCTTGAGGCACCAAACTTGTTTGAACGAATGgtattatcttacagagcaatcttttatggcattatagacagcatgaaaattagttatgtcctctttggtaaatataataataatctctgttattttccaattcaatttgtag

upper sequence: Vv11s0016g00170.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: AT3G43300.2 (Arabidopsis thaliana), 5'ss of exon 15
GATGCTTGAGAAAGTTTGTAAAGATCCCCAGATGCTTGTTGACATATATGTGAACTATGATTGTGATCTTGAGGCCCCAAACTTGTTTGAGCGCATGgtataatctaacatattattgcattataatgtttatttgttgataggttctgcttgattctcttggatatatctcaaacgaatccattttgccttcttatcatttag
||||||||||||||| || |||||||| ||||||||||||||  | ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |  || |   |   |||   |||||    |  | |  |       | ||  || |  |  ||  |  |  | | | |  |  ||||| | ||            
GATGCTTGAGAAAGTCTGCAAAGATCCTCAGATGCTTGTTGATGTGTATGTAAACTATGATTGTGATCTAGAGGCCCCAAACTTGTTTGAGCGCATGgtgtgctccatttt-ccattcttttatataactactgtacttcagcaatgtgactggtagttatgact-cacattacatgtttttattttactttag----------

upper sequence: Vv11s0016g00170.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: PP1S382_36V6.1 (Physcomitrella patens), 5'ss of exon 7
GATGCTTGAGAAAGTTTGTAAAGATCCCCAGATGCTTGTTGACATATATGTGAACTATGATTGTGATCTTGAGGCCCCAAACTTGTTTGAGCGCATGgtata-atctaacatattattgcattataatgtttatttgttgataggttctgcttgattctcttggatatatctcaaacgaatccattttgccttcttatcatttag
|||||| ||||| | ||| || ||||| |||||||| |  ||||| | ||||||||| ||||||||||| || ||  | ||||||||||| ||||||||||  | |  | | ||   ||||     | |||| |||| |    |    |   || | |    |||| |         ||   ||| ||| |     |  ||    
GATGCTGGAGAAGGCTTGCAACGATCCGCAGATGCTGGCAGACATTTTTGTGAACTACGATTGTGATCTGGACGCTACGAACTTGTTTGAACGCATGgtatggagccgaaacat-ggtgcaagtgcacgtttgtttggtctgggacggtcagtggtgcgtgaggatgtggtgatgctga---catgttgacaagcgagaat----

upper sequence: Vv11s0016g00170.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: PP1S19_33V6.1 (Physcomitrella patens), 5'ss of exon 7
GATGCTTGAGAAAGTTTGTAAAGATCCCCAGATGCTTGTTGACATATATGTGAACTATGATTGTGATCTTGAGGCCCCAAACTTGTTTGAGCGCATGgtataatctaacatattattgcattataatgtttatttgttgataggttctgcttgattctcttggatatatctcaaacgaatccattttgccttcttatcatttag
 ||| | | ||| | |||  | ||||| ||||||||    ||||| | ||||||||||||||| ||||| |||||| | ||||| ||||| |||||||||  |  | | |   | || ||    ||||  ||||||||  || |     | | |     |  |    |   |  | ||     || |   |  | |    |   
AATGGTGGGGAAGGCTTGCGATGATCCGCAGATGCTGACGGACATTTTTGTGAACTATGATTGCGATCTGGAGGCCACGAACTTATTTGAACGCATGgtaagaaatgaaaagatgttaca----aatgcatatttgttagtacggaggccgtcagcggttaaggagaacaacgcatgatgatgttgtcattgatgagtggt---