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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGATTATCAAGACAGAGATTATGATGTTGCAGCTCTAGCAAATAACTTGAGTCAGGCATTCCGATATGGCATTTATAGTAATGATGATATGGATGAGgtattgtttaatctaattagtccatctttactttctatttttggtactttaacatatatatatatatatatatatatataagtttaccccaaatgcgagt...

Basic information

species Vitis vinifera
transcript Vv10s0003g04630.t01
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g04630.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: LOC_Os01g40340.1 (Oryza sativa), 5'ss of exon 14
TGATGATTATCAAGACAGAGATTATGATGTTGCAGCTCTAGCAAATAACTTGAGTCAGGCATTCCGATATGGCATTTATAGTAATGATGATATGGATGAGgtat-tgttt-aatctaattagtccatctttactttctatttttggtactttaacatatatatatatatatatatatatataagtttaccccaaatgcgagt
|||||| |  | |||||| ||||||||||| |||||||| || ||||||||||| ||||||||||||||||| || ||||| |||||||||||||| ||||| | |||||  |   | || ||   ||||   ||  |  |||  ||   | ||||| | | | |      | || |   || |||||     |  |     
TGATGACTTCCGAGACAGGGATTATGATGTGGCAGCTCTTGCTAATAACTTGAGCCAGGCATTCCGATATGGGATATATAGCAATGATGATATGGAAGAGgtgtgtgttttgaatgattttgtttctcttgctttgatggtttgcgtcagtcaacatgtttctctgccagcacattttgttaggtttaatttgagaggat--

upper sequence: Vv10s0003g04630.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: LOC_Os01g40390.1 (Oryza sativa), 5'ss of exon 5
TGATGATTATCAAGACAGAGATTATGATGTTGCAGCTCTAGCAAATAACTTGAGTCAGGCATTCCGATATGGCATTTATAGTAATGATGATATGGATGAGgtat-tgtttaatctaattagtccatctttactttctatttttggtactttaacatatatatatatatatatatatatataagtttaccccaaatgcgagt
||||||||  | |||||| ||||||||||| |||||||| || ||||||||||| ||||||||||||||||  || ||||  |||||||||||||| ||||| | ||| | |   | || ||   | ||   ||  |  |||   |   | ||||| | | | |      | || |   || |||||     |  | || |
TGATGATTTCCGAGACAGGGATTATGATGTGGCAGCTCTTGCTAATAACTTGAGCCAGGCATTCCGATATGTGATATATAACAATGATGATATGGAAGAGgtgtatgtgtgaatgattttgtttctattgctttgatggtttgcatcagtcaacatgtttctctgccagcacattttgttaggtttaatttgagag-gatt

upper sequence: Vv10s0003g04630.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: LOC_Os01g40370.1 (Oryza sativa), 5'ss of exon 3
TGATGATTATCAAGACAGAGATTATGATGTTGCAGCTCTAGCAAATAACTTGAGTCAGGCATTCCGATATGGCATTTATAGTAATGATGATATGGATGAGgtat-tgtttaatctaattagtccatctttactttctatttttggtactttaacatatatatatatatatatatatatataagtttaccccaaatgcgagt
||| || |  | |||||  ||||||||||| | ||||||  | ||||||||||| |||||||| |||||||| || ||||| |||||||||||||| ||||| | ||| | |   | || ||   | |    ||  |  |||  ||   | ||||| | | | |      | || |   || |||||     |  | || |
TGACGACTTCCGAGACATGGATTATGATGTGGTAGCTCTTACTAATAACTTGAGCCAGGCATTGCGATATGGGATATATAGCAATGATGATATGGAAGAGgtgtgtgtgtgaatgattttgtttctatcgctttgatggtttgcgtcggtcaacatgtttctctgccagcacattttgttaggtttaatttgagag-gatt

upper sequence: Vv10s0003g04630.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GRMZM2G149321_T01 (Zea mays), 5'ss of exon 7
TGATGATTATCAAGACAGAGATTATGATGTTGCAGCTCTAGCAAATAACTTGAGTCAGGCATTCCGATATGGCATTTATAGTAATGATGATATGGATGAGgtattgtttaatctaattagtccatctttactttctatttttggtactttaacatatatatatatatatatatatatataagtttaccccaaatgcgagt----------
|||||| |  |  ||||| ||||| || || |||||||| || |||||||| ||||||||||| || ||||| || ||||| || ||||| || || |||||  |     || ||   |||  ||   |  || ||| |     ||||| | ||| ||| | |  || |||    |||| |  || |||  |  |  | |          
TGATGACTTCCGGGACAGGGATTACGACGTGGCAGCTCTTGCTAATAACTTAAGTCAGGCATTTCGTTATGGGATATATAGCAACGATGACATTGAAGAGgtgataac--atttag--agtaaatagcttgttgctactgaca-tacttca-catctattttttaatgtatg---atatgacattgccctgag-gaaaatagattagttc

upper sequence: Vv10s0003g04630.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA15G13580.1 (Glycine max), 5'ss of exon 16
TGATGATTATCAAGACAGAGATTATGATGTTGCAGCTCTAGCAAATAACTTGAGTCAGGCATTCCGATATGGCATTTATAGTAATGATGATATGGATGAGgtattgtttaatctaattagt--ccatctttactttctatttttggtactttaa---catatatatatatatatatatatatataagtttaccccaaatgcgagt
 ||||||||||||||  | || |||||||||||  |  |||||||||| ||||||||||| ||||| ||||||||||| | |||||| || || || ||||||   |    || |   | |  |  | | |||  || | |||   |  | ||    ||| | ||||  | |  | | |   | |    || |   |||      
GGATGATTATCAAGATCGGGACTATGATGTTGCTACATTAGCAAATAATTTGAGTCAGGCCTTCCGTTATGGCATTTACAATAATGAAGACATTGAAGAGgtacattcatttccagggactacctgtgtctacaatcaaatttgcattttgtagtgtcatttttatagctctgaacagaagaacagaaatatctggaatt-----

upper sequence: Vv10s0003g04630.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: AT1G30470.2 (Arabidopsis thaliana), 5'ss of exon 16
TGATGATTATCAAGACAGAGATTATGATGTTGCAGCTCTAGCAAATAACTTGAGTCAGGCATTCCGATATGGCATTTATAGTAATGATGATATGGATGAGgtattgtt-taatctaattagtccatctttactttctatttttggtactttaacatatatat-atatatatatatatatataagtttaccccaaatgcgagt
||||||||| || || |||||||||||||| ||||| |||||||| || ||||| ||||| || |||||||| ||||| || |||||||| |||||||||||  |||| |  | |      | |||   | ||   | |   |  |  ||  | ||   ||| ||  |    | |      |  ||| |   || |    | 
TGATGATTACCACGATAGAGATTATGATGTGGCAGCCCTAGCAAACAATTTGAGCCAGGCTTTTCGATATGGAATTTACAGCAATGATGACATGGATGAGgtgatgttctcgtgtttccttttcatagctgctacgtgtgacttttctttggaaattagtattatccaagattttggccgcatattt-caataagttttgg-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30321554|gb|CD004816.1|CD004816
EST:     TGAGTCAGGCATTCCGATATGGCATTTATAGTAATGATGATATGGATGAG                         ACTCATGGCCAACTTGAACGGGATGATGAG
genomic: TGAGTCAGGCATTCCGATATGGCATTTATAGTAATGATGATATGGATGAGgtattgttta ... attcatgcagACTCATGGCCAACTTGAACGGGATGATGAG
EST: gi|110698945|gb|EE077019.1|EE077019
EST:     TGAGTCAGGCATTCCGATATGGCATTTATAGTAATGATGATATGGATGAG                         ACTCATGGCCAACTTGAACGGGATGATGAG
genomic: TGAGTCAGGCATTCCGATATGGCATTTATAGTAATGATGATATGGATGAGgtattgttta ... attcatgcagACTCATGGCCAACTTGAACGGGATGATGAG
EST: gi|30321558|gb|CD004820.1|CD004820
EST:     TGAGTCAGGCATTCCGATATGGCATTTATAGTAATGATGATATGGATGAG                         ACTCATGGCCAACTTGAACGGGATGATGAG
genomic: TGAGTCAGGCATTCCGATATGGCATTTATAGTAATGATGATATGGATGAGgtattgttta ... attcatgcagACTCATGGCCAACTTGAACGGGATGATGAG
EST: gi|30134857|gb|CB920195.1|CB920195
EST:     TGAGTCAGGCATTCCGATATGGCATTTATAGTAATGATGATATGGATGAG                         ACTCATGGCCAACTTGAACGGGATGATGAG
genomic: TGAGTCAGGCATTCCGATATGGCATTTATAGTAATGATGATATGGATGAGgtattgttta ... attcatgcagACTCATGGCCAACTTGAACGGGATGATGAG