Sequence
atgc intronic sequence ATGC exonic sequenceATTCTTAGCTGAAGAGAGAATTCTTCTACCAAATCCACCTCTTGAACCTGGACTTCCAGCCATCTCAATCAAGAATGGATACTTTTCTTGGGATTCAAAGgtctatatcttaactttttgtgtgcggccccccatactcccccccacacacccccctgcccccgggccccagccccacacacacacacagagacatgggt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g04390.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: LOC_Os04g52900.2 (Oryza sativa), 5'ss of exon 16
ATTCTTAGCTGAAGAGAGAATTCTTCTACCAAATCCACCTCTTGAACCTGGACTTCCAGCCATCTCAATCAAGAATGGATACTTTTCTTGGGATTCAAAGgt----ctatatcttaactttttgtgtgcggccc-------cccatactcccccccacacacccccctgcccccgggccccagccccacacacacacacagagacatgggt
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CCTCTTGGCTGAAGAGAGATTACTTCTGCCCAATCCACCTCTTGATCCTGAGCTTCCAGCAATTTCTATTAAGAATGGATATTTTTCATGGGAATCGCAGgtaatttcatgtttcagatatttgcctggtatctaaatatatctatgttgactatcacacattcaactctcatcattcattgatattataatataacaca-----------
upper sequence: Vv10s0003g04390.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GRMZM2G084181_T01 (Zea mays), 5'ss of exon 16
ATTCTTAGCTGAAGAGAGAATTCTTCTACCAAATCCACCTCTTGAACCTGGACTTCCAGCCATCTCAATCAAGAATGGATACTTTTCTTGGGATTCAAAGgt----ctatatcttaact--ttttgtgtgcggccccccatactcccccccacacacccccctgcccccgggccccagccccacacacacacacagagacatgggt
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CCTGTTGGCTGAAGAGAGATTACTTCTGCCAAATCCACCTATTGATCCTGATCTTCCAGCCATTTCTATCAAGAATGGGTATTTTTCATGGGAATCAGAGgtaaattcatgttttatatatttttatttatttgccactatcatttattttcttcaatcttgtaattgctgctcttaggattatg---gtagttgatttcttg---
upper sequence: Vv10s0003g04390.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA15G09900.1 (Glycine max), 5'ss of exon 16
ATTCTTAGCTGAAGAGAGAATTCTTCTACCAAATCCACCTCTTGAACCTGGACTTCCAGCCATCTCAATCAAGAATGGATACTTTTCTTGGGATTCAAAGgtctatatc---ttaactttttgtgtgcggccccccatactcccccccacacacccccctgcccccgggccccagccccacacacacacacagagacatgggt-
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ACTCTTAGCAGAAGAGAGAGTACTTCTACCAAATCCACCTATTGAGCCAGGATTACCAGCCATCTCGATCAAGAATGGATACTTTTCTTGGGATGCGAAGgtccatatccttttgacatcatgtatccatttgtttgcataaagg---acatctgttcgttcactagtaccctcatgctggaaa-acattttttgtctgttgta
upper sequence: Vv10s0003g04390.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA13G29180.1 (Glycine max), 5'ss of exon 16
ATTCTTAGCTGAAGAGAGAATTCTTCTACCAAATCCACCTCTTGAACCTGGACTTCCAGCCATCTCAATCAAGAATGGATACTTTTCTTGGGATTCAAAGgtctatatc---ttaac-tttttgtgtgcggccccccatactcccccccacacacccccctgcccccgggccccagccccacacacacacacagagacatgggt
| ||||||| ||||||||||| |||||| |||||||||||||||| || || | ||||||||||| ||||||||||||||||||||||||||| | ||||| ||||| || || | || || | | | | | | || ||| | | | || | |||| || |||||
ACTCTTAGCAGAAGAGAGAATACTTCTATCAAATCCACCTCTTGAGCCAGGGTTACCAGCCATCTCGATCAAGAATGGATACTTTTCTTGGGATACGAAGgttcatatccttttgacatccttatgcttctattctagtcattatatatatatatccatttgcttgcagac---agggaggaatgcacatacttgagtatggg-
upper sequence: Vv10s0003g04390.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: AT1G30400.2 (Arabidopsis thaliana), 5'ss of exon 16
ATTCTTAGCTGAAGAGAGAATTCTTCTACCAAATCCACCTCTTGAACCTGGACTTCCAGCCATCTCAATCAAGAATGGATACTTTTCTTGGGATTCAAAGgtctatat--cttaactttttgtgtgcggccccccatactccccccca-cacacccccctgcccccgggccccagccccacacacacacacagagacatgggt
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ACTGTCAACCGAAGAGAGAGTTCTCTTACCGAATCCTCCCATTGAACCTGGACAGCCAGCTATCTCAATAAGAAATGGATACTTCTCCTGGGATTCAAAGgtcttctttgtctattttatcacatgttcttacttctattagtttctatcattacatattgtcaatgaagtacaaaaagtgagctagaagtatacatatgcag
upper sequence: Vv10s0003g04390.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: AT2G34660.1 (Arabidopsis thaliana), 5'ss of exon 16
ATTCTTAGCTGAAGAGAGAATTCTTCTACCAAATCCACCTCTTGAACCTGGACTTCCAGCCATCTCAATCAAGAATGGATACTTTTCTTGGGATTCAAAGgtctatatcttaactttttgtgtgcggccccccatactcccccccacacacc-cccctgcccccgg---gccccagccccacacacacac-acagagacatgggt
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ATTGGCGACAGAAGAAAGAATTCTCTTACCAAATCCTCCCATTGAACCTGGAGAGCCAGCCATCTCAATAAGAAATGGATATTTCTCTTGGGATTCTAAGgt--gtcgcttggctattc-tataccatgttccttctttcgcttctctcattacctttatccatagaaagtacaaaaatcgagctaaccctatgtatctacag--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34549912|gb|CF518144.1|CF518144EST: GACTTCCAGCCATCTCAATCAAGAGTGGATACTTTTCTTGGGATTCAAAG GCTGACAGGCCTACATTGTCGAATGTCAATTTGGATATACCAGTTGGTGGT
genomic: GACTTCCAGCCATCTCAATCAAGAATGGATACTTTTCTTGGGATTCAAAGgtctatatct ... tttgttccagGCTGACAGGCCTACATTGTCGAATGTCAATTTGGATATACCAGTTGGTGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTCTTAGCTGAAGAGAGAATTCTTCTACCAAATCCACCTCTTGAACCTGGACTTCCAGCCATCTCAATCAAGAATGGATACTTTTCTTGGGATTCAAAGgtctatatcttaactttttgtgtgcggccccccatactcccccccacacacccccctgcccccgggccccagccccacacacacacacagagacatgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agagaca