Sequence
atgc intronic sequence ATGC exonic sequenceCGGTGATTTACAGCAGTAACAAGAAGCTACTCTACAGCAATGTTAATTTGAAAGAAGTCAGCCACATGTGCCCTTTCAATTCTGCTGCTTTTCCAGATAGgtaccttttgctgcctttacttgttgcttttacttattgttctttactttcttccaacgtatgcatgtgaaatcatacagaaaaaattcatttccaatga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g04360.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GRMZM2G402002_T01 (Zea mays), 5'ss of exon 16
CGGTGATTTACAGCAGTAACAAGAAGCTACTCTACAGCAATGTTAATTTGAAAGAAGTCAGCCACATGTGCCCTTTCAATTCTGCTGCTTTTCCAGATAGgtaccttttgctgcctttacttgttgc--ttttacttattgttctttactttcttccaacgtatgcatgtgaaatcatacagaaaa--aattcatttccaatga
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CTGTCATCTATAGCAGCAATAAGAAGCTTCTCTACAGCAATGTCAATTTGAAAGAGGTTAATCATATGTGCCCTTTCAATACAGCCGCTTTTCCAGACAGgtttgttcc-ctctctagatttgttgcaatggaattacttagtctttgagtacctcctgtatgtacttgggaattgggatgatatatcaatttgtttg-aat--
upper sequence: Vv10s0003g04360.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GRMZM2G430027_T01 (Zea mays), 5'ss of exon 4
CGGTGATTTACAGCAGTAACAAGAAGCTACTCTACAGCAATGTTAATTTGAAAGAAGTCAGCCACATGTGCCCTTTCAATTCTGCTGCTTTTCCAGATAGgtaccttttgctgcctttacttgttgct-tttacttattgttctttactttcttccaacgtatgcatgtgaaatcatacagaaaaaattcatttccaatga-
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CTGTCATCTATAGCAGCAATAAGAAGCTTCTCTATAGCAATGTAAATTTGAAAGAGGTTAATCATATGTGCCCTTTCAATACAGCCGCTTTTCCAGACAGgtttgttcc-ctctctagattttgtgcaatggaattgaagtcttcaactttgagtcaa-gtatctcctgtatgtactggaattgggattatgtatcaatttg
upper sequence: Vv10s0003g04360.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA05G30530.1 (Glycine max), 5'ss of exon 16
CGGTGATTTACAGCAGTAACAAGAAGCTACTCTACAGCAATGTTAATTTGAAAGAAGTCAGCCACATGTGCCCTTTCAATTCTGCTGCTTTTCCAGATAGgtaccttttgctgcctttacttg-ttgcttttacttattgttctttactttcttccaacgtatgcatgtgaaatcatacag-aaaaaattcatttccaatga--------------------------------
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CTGTGATTTACAGTAGTAACAAAAAATTACTTTATAGTAATGTGAATCTGAAGGAAGTGAGTCACATGTGTCCTTTCAATTCTGCTGCTTTTCCAGACAGgtatctatgtcattgctagtttgacttactagagttattgacatatccccttgtgctgttcttggatcttgtacaatttaatataaaatcctttactggtgatggtactcatctacttttaataacttaaacag
upper sequence: Vv10s0003g04360.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA08G13680.1 (Glycine max), 5'ss of exon 16
CGGTGATTTACAGCAGTAACAAGAAGCTACTCTACAGCAATGTTAATTTGAAAGAAGTCAGCCACATGTGCCCTTTCAATTCTGCTGCTTTTCCAGATAGgtacctt-----ttgctgcctttacttgttg----cttttacttattgttctttact-ttcttccaacgtatgca------tgtgaaatcataca-----gaaaaaattcatttccaatga-------------
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CTGTAATTTATAGTAGTAACAAAAAATTACTTTATAGTAATGTGAATCTGAAGGAAGTGAGTCACATGTGTCCTTTCAATTCTGCTGCTTTTCCAGACAGgtatcttggtctttgttagtttgacttactagagttgtttacatatccccttgtgctgttcttggatcttgtacaatttaatgtaaaatcttttactggtgatgacactcatctactgttaataactgaaacag
upper sequence: Vv10s0003g04360.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA12G08330.1 (Glycine max), 5'ss of exon 3
CGGTGATTTACAGCAGTAACAAGAAGCTACTCTACAGCAATGTTAATTTGAAAGAAGTCAGCCACATGTGCCCTTTCAATTCTGCTGCTTTTCCAGATAGgtacctt-----ttgctgcctttacttgttg----cttttacttattgttctttact-ttcttccaacgtatgca------tgtgaaatcataca-----gaaaaaattcatttccaatga-------------
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CTGTAATTTATAGTAGTAACAAAAAATTACTTTATAGTAATGTGAATCTGAAGGAAGTGAGTCACATGTGTCCTTTCAATTCTGCTGCTTTTCCAGACAGgtatcttggtctttgttagtttgacttactagagttgtttacatatccccttgtgctgttcttggatcttgtacaatttattgtaaaatcttttactggtgatgacactcatctactgttaataactgaaacag
upper sequence: Vv10s0003g04360.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: AT4G05420.2 (Arabidopsis thaliana), 5'ss of exon 15
CGGTGATTTACAGCAGTAACAAGAAGCTACTCTACAGCAATGTTAATTTGAAAGAAGTCAGCCACATGTGCCCTTTCAATTCTGCTGCTTTTCCAGATAGgtaccttttgctgcctttacttgttgcttttacttattgttctttactttcttccaacgtatgcatgtgaaatcatacagaaa--aaattcatt------tccaatga----
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CCGTGATCTATAGCAGCAACAAGAAGCTGTTATATAGCAATGTCAATCTTAAAGAAGTTAGTCATATGTGCCCTTTCAATTCTGCTGCTTTTCCCGACAGgtacactaaacatcctct-ctttttcttgtcggtttttgctttgaatttctaattcctatatgaa-gctaagtggctctgaaatctgattctctgttctatcttatgagcag
upper sequence: Vv10s0003g04360.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: AT4G21100.1 (Arabidopsis thaliana), 5'ss of exon 16
CGGTGATTTACAGCAGTAACAAGAAGCTACTCTACAGCAATGTTAATTTGAAAGAAGTCAGCCACATGTGCCCTTTCAATTCTGCTGCTTTTCCAGATAGgtaccttttgctgcctttacttgttgcttttacttattgttctttactttcttccaacgtatgcatgtgaaatcatacagaaaaaattcatttccaatga---
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CTGTTATATATAGCAACAACAAGAAGCTATTATACAGCAACGTGAATCTGAAAGAAGTTAGTCATATGTGTCCCTTCAACTCTGCTGCTTTTCCAGACAGgtaaactatatt--tttcctctgttattttcctttgggat--------------caaagtacat-tgtggtgaaatctggctctacttctcttccattggcag
upper sequence: Vv10s0003g04360.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: EFJ23079 (Selaginella moellendorffii), 5'ss of exon 16
CGGTGATTTACAGCAGTAACAAGAAGCTACTCTACAGCAATGTTAATTTGAAAGAAGTCAGCCACATGTGCCCTTTCAATTCTGCTGCTTTTCCAGATAGgtaccttttgctgcctttacttgttgcttttacttattgttctttactttcttccaacgtatgcatgtgaaatcatacagaaaaaattcatttccaatga
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CGGTCATTTACAGTAGCAACAAGAAGCTGCTTTACAGCAACGTGAATCTGAAGGAGGTGAATCACATGTGTCCTTTCAACTCTGCATCTTTTCCCGACAGgt-ctgtttctagttctcttttgtgagctctattaacaagcttttgtttgtcgtaatcag----------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718555|gb|FC065380.1|FC065380EST: AAAGAAGTCAGCCACATGTGCCCTTTCAATTCTGCTGCTTTTCCAGATAG CCTTGCAATTGCCAAAGAAGGTGATCTTACAATCGGTACCATTGATGATAT
genomic: AAAGAAGTCAGCCACATGTGCCCTTTCAATTCTGCTGCTTTTCCAGATAGgtaccttttg ... tttcttacagCCTTGCAATTGCCAAAGAAGGTGATCTTACAATCGGTACCATTGATGATAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGGTGATTTACAGCAGTAACAAGAAGCTACTCTACAGCAATGTTAATTTGAAAGAAGTCAGCCACATGTGCCCTTTCAATTCTGCTGCTTTTCCAGATAGgtaccttttgctgcctttacttgttgcttttacttattgttctttactttcttccaacgtatgcatgtgaaatcatacagaaaaaattcatttccaatga
- - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat