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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTAATTGCCCCTGCATTCGTAAGGCTTGTGATTATCTGTTGTCCAAGGAGCTTGGTTCAGGTGGTTGGGGGGAGAGTTATCTGTCATGCCAGAACAAGgtttcgatttccattctgtgtggaatttctttactttattgttctagtatgcttcatgatgtttgttcttaataaatgctgcttataaatctgcaaagtt...

Basic information

species Vitis vinifera
transcript Vv09s0054g01090.t01
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g01090.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GRMZM2G469298_T01 (Zea mays), 5'ss of exon 10
CAGTAATTGCCCCTGCATTCGTAAGGCTTGTGATTATCTGTTGTCCAAGGAGCTTGGTTCAGGTGGTTGGGGGGAGAGTTATCTGTCATGCCAGAACAAGgt--ttcgatttccattctgtgtggaatttctttactttattgttctagtatgcttcatgatgtttgttcttaataaatgctgcttataaatctgcaaagtt
||  ||| | ||    ||    ||||| ||||||| ||| ||||| |||||||||   || ||||| ||||| ||||||||| ||||||| |||||||||||   | |  ||  | ||| |  |   ||| ||   | |   ||| |||                                                     
CAACAATAGTCCTGTAATAAAAAAGGCATGTGATTTTCTTTTGTCGAAGGAGCTTCCATCCGGTGGATGGGGAGAGAGTTATTTGTCATGTCAGAACAAGgtaacttgtcttatactctttccgttcttttttatttgtcgcgttttag-----------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|83275268|gb|DV938419.1|DV938419
EST:     AGCTTGCTTCAGGTGGTTGGGGGGAGAGTTATCTGTCATGCCAGAACAAG                         GTGTACACAAATCTCCCTGGAGATAAGCCACATAATGTCAATACTGCTTGG
genomic: AGCTTGGTTCAGGTGGTTGGGGGGAGAGTTATCTGTCATGCCAGAACAAGgtttcgattt ... ctttaaacagGTGTACACAAATCTCCCAGGAGATAAGCCACATAATGTCAATACTGCTTGG
EST: gi|33403610|gb|CF209237.1|CF209237
EST:     AGCTTGCTTCAGGTGGTTGGGGGGAGAGTTATCTGTCATGCCAGAACAAG                         GTGTG-ATCAAATCTCCC
genomic: AGCTTGGTTCAGGTGGTTGGGGGGAGAGTTATCTGTCATGCCAGAACAAGgtttcgattt ... ctttaaacagGTGTACA-CAAATCTCCC
EST: gi|110415466|gb|EC981375.1|EC981375
EST:     AGCTTGCTTCAGGTGGTTGGGGGGAGAGTTATCTGTCATGCCAGAACAAG                         GTGTACACAAATCTCCCTGGAGATAAGCCACATAATGTCAATACTGCTTGG
genomic: AGCTTGGTTCAGGTGGTTGGGGGGAGAGTTATCTGTCATGCCAGAACAAGgtttcgattt ... ctttaaacagGTGTACACAAATCTCCCAGGAGATAAGCCACATAATGTCAATACTGCTTGG
EST: gi|110701213|gb|EE078556.1|EE078556
EST:     AGCTTGCTTCAGGTGGTTGGGGGGAGAGTTATCTGTCATGCCAGAACAAG                         GTGTACACAAATCTCCCAGGAGATAAGCCACATAATGTCAATACTGCTTGG
genomic: AGCTTGGTTCAGGTGGTTGGGGGGAGAGTTATCTGTCATGCCAGAACAAGgtttcgattt ... ctttaaacagGTGTACACAAATCTCCCAGGAGATAAGCCACATAATGTCAATACTGCTTGG
EST: gi|32459149|gb|CD800323.1|CD800323
EST:     CTTGGTTCTCAGGTGGTTGGGGGGAGAGTTATCTGTCATGCCAGAACAAG                         GTGTACACAAATCTCCCAGGAGATAAGCCACATAATGTCAATACTGCTTGG
genomic: CTTGG-T-TCAGGTGGTTGGGGGGAGAGTTATCTGTCATGCCAGAACAAGgtttcgattt ... ctttaaacagGTGTACACAAATCTCCCAGGAGATAAGCCACATAATGTCAATACTGCTTGG