Sequence
atgc intronic sequence ATGC exonic sequenceGTCACCATTGTGGTTGTTGCAGTGCCTGAAGGGCTGCCTTTGGCTGTTACCTTGACgtaagctttagatttctacttttggttttttgttgcagtaataatgaaaagcagtttattttcttggcctttgattctgtttatttattcttagcttttattctgtgacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA08G23760.1 (Glycine max), 5'ss of exon 17
GTCACCATTGTGGTTGTTGCAGTGCCTGAAGGGCTGCCTTTGGCTGTTACCTTGACgtaag--ctttagatttctacttttggttttttgttgcagtaataatgaaaagcagttta----ttttcttggcctttgattctgtttatttattcttagcttttattctgtgacag
||||| |||||||||||||||||||||||||| || ||||||||||||||||| ||||||| | | | | ||| || | || ||| |||| || | | | || || | | || | || || || ||| | || || | ||
GTCACAATTGTGGTTGTTGCAGTGCCTGAAGGTCTACCTTTGGCTGTTACCTTAACgtaagtacatgtggctaggttatttcattatgcaacatagatatagccaaaactaggccacagatactgtttgcttctaatcc-gtgtaatt-ttcctcttgttgctttcacaatag
upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA07G00630.1 (Glycine max), 5'ss of exon 17
GTCACCATTGTGGTTGTTGCAGTGCCTGAAGGGCTGCCTTTGGCTGTTACCTTGACgtaagctttagatttcta---cttttggttttttgttgcagtaataatgaaaagcagttta----ttttcttggcctttgattctgtttatttattcttagcttttattctgtgacag
||||| |||||||| || ||||| |||||||| || ||||||||||||||||| ||||||| | | | ||| ||| || | || || |||| || | | || || || | | || |||| | || ||| | || || | | ||
GTCACAATTGTGGTCGTGGCAGTCCCTGAAGGTCTACCTTTGGCTGTTACCTTAACgtaag-tacaagtggctaggttatttcattatgcaacatagatatggccaaaactaggccacagatattgtttgcttctaat-ctgtgcaatt-ttcctcctgttgctttcgcaatag
upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA15G00340.1 (Glycine max), 5'ss of exon 15
----------GTCACCATTGTGGTTGTTGCAGTGCCTGAAGGGCTGCCTTTGGCTGTTACCTTGACgtaagctttagatttctacttttggttttttgttgcagtaataatgaaaagcagtttattttcttggcctttgattctgtttatttattcttagcttttattctgtgacag
|| || |||||||| ||||||||||| ||||| || ||||| || |||||||| ||||||| | | || |||
AGCCATGCAGGTAACAATTGTGGTGGTTGCAGTGCCCGAAGgtctacctttagcagttaccttaacgtaag-taaatgttgctag--------------------------------------------------------------------------------------------
upper sequence: Vv09s0018g02130.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA13G44990.1 (Glycine max), 5'ss of exon 16
GTCACCATTGTGGTTGTTGCAGTGCCTGAAGGGCTGCCTTTGGCTGTTACCTTGACgtaagctttagatttctacttttggttttttgttgcagtaa---taatgaaaagcagtttattttct-tggcctttgattctgtttatttattcttagcttttat-tctgtgacag
|| || |||||||| ||||||||||| ||||| || ||||| || |||||||| ||||||| | | || ||| || | || | || | || |||| || | | | | | | || | ||||| || || | || | | ||| ||
GTAACAATTGTGGTGGTTGCAGTGCCCGAAGGTCTACCTTTAGCAGTTACCTTAACgtaag-taaatgttgctagttatttccttgtacaacacaagacgtagccaaaaccaagctgtctgatgtttcattctaatctgtgtaattttcctccttgaccacacccatgatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71864361|gb|DT013416.1|DT013416EST: ATTGTGGTTGTTGCAGTGCCTGAAGGGCTGCCTTTGGCTGTTACCTTGAC CCTAGCATACTCCATGCGAAAGATGATGGCAGATAAGGC-TT----TG-
genomic: ATTGTGGTTGTTGCAGTGCCTGAAGGGCTGCCTTTGGCTGTTACCTTGACgtaagcttta ... tctgtgacagCCTAGCATACTCCATGCGAAAGATGATGGCAGATAAGGCTTTGGCATGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCACCATTGTGGTTGTTGCAGTGCCTGAAGGGCTGCCTTTGGCTGTTACCTTGACgtaagctttagatttctacttttggttttttgttgcagtaataatgaaaagcagtttattttcttggcctttgattctgtttatttattcttagcttttattctgtgacag
- - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - GCTGTT