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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAATCTTTCTTCACTCACACAATTTGTCATGAATGCTGCCATGGGATCGGGCCTCATACCATAATACTCCCAAATGGTCAAAAGTCTACAGTGAGATTGgtgggttgaatttttttccccatttatgatctttatttacttgcttaatattttggttgtcatttattgaacttaaatggatgaaaattattctaatgaaacttaatatctgattgccctctttcctttttattcttttccctcttcatacag

Basic information

species Vitis vinifera
transcript Vv09s0018g01600.t01
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0018g01600.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA20G08880.1 (Glycine max), 5'ss of exon 16
---------TGAATCTTTCTTCACTCACACAATTTGTCATGAATGCTGCCATGGGATCGGGCCTCATACCATAATACTCCCAAATGGTCAAAAGTCTACAGTGAGATTGgtgggttgaatttttttccccatttatgatctttatttacttgcttaatattttggttgtcatttattgaacttaaatggatgaaaattattctaatgaaacttaatatctgattgccctctttcctttttattcttttccctcttcatacag
         |||||| ||||| || |   ||||||| ||||||||||||||||| || || || |||||||||| ||| |||||||| |||||||| || || |||||| |  |||  |   | | |  || ||| |   ||| |||  ||||| ||  ||||| |    | ||| ||    ||      | ||| |  |                                                              
TGTAGATTTTGAATCATTCTTTACGCGTTCAATTTGCCATGAATGCTGCCATGGAATTGGACCACATACCATAACACTTCCAAATGGCCAAAAGTCCACTgtcagattgctcagttccacaatatgcttcacttaagcaatttctttgattgctaaaatttttgctgtaaacttactgtcagtatggccgttaaattcgt--------------------------------------------------------------

upper sequence: Vv09s0018g01600.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: AT1G79690.1 (Arabidopsis thaliana), 5'ss of exon 16
TGAATCTTTCTTCACTCACACAATTTGTCATGAATGCTGCCATGGGATCGGGCCTCATACCATAATACTCCCAAATGGTCAAAAGTCTACAGTGAGATTGgtgggttgaatttttttccccatttatgatctttatttacttgcttaatattttggttgtcatttattgaacttaaatggatgaaaattattctaatgaaacttaatatctgattgccctctttcctttttattcttttccctcttcatacag
||| ||||||||||||||||| ||||| |||||||| |||||||| || || || ||||||||||  || ||   ||||||||  || |||||||||      ||||  | |  ||     |   |||      || || ||    | | |||  | ||| | |  |  || |||  |   |      | |     |    | |   ||||                                          
TGATTCTTTCTTCACTCACACCATTTGCCATGAATGTTGCCATGGCATTGGTCCCCATACCATAACCCTTCCTGGTGGTCAAACCTCAACAGTGAGAA----AGgttatactgcttattggaagaatg-cagacatctaattaaggattgtttgcgctgtgactagt--aatttacctttgt------tttctcggtatttcctttgatctag----------------------------------------