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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCGGGGGCTAACCATAACAAGAAGAAAGGAATGGTTCTTCCATTCCAACCATATTCTATTACCTTCGATGATATTAGATACTCAGTTGACATGCCAGAGgtaacttcatatttatgcaaataatgtgtatgttttatcagcactgaagttttgtcataatgtactataaaccaaaaatgagaactgagttgtttgaaatgaatttgcag

Basic information

species Vitis vinifera
transcript Vv09s0002g05600.t01
intron # 16
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352776947|gb|FQ474254.1|FQ474254
EST:     CATATTCTATTACCTTCGATGATATTAGATACTCAGTTGACATGCCAGAG                         GAGATGAAAAGTCAAGGTGTTGTTGAAGACAAATTGGAGCTTCTGAAGGGG
genomic: CATATTCTATTACCTTCGATGATATTAGATACTCAGTTGACATGCCAGAGgtaacttcat ... gaatttgcagGAGATGAAAAGTCAAGGTGTTGTTGAAGACAAATTGGAGCTTCTGAAGGGG
EST: gi|161716735|gb|FC067198.1|FC067198
EST:     CATATTCTATTACCTTCGATGATATTAGATACTCAGTTGACATGCCAGAG                         GAGATGAAAAGTCAAGGTGTCGTTGAAGACAAATTGGAGCTTCTGAAGGGG
genomic: CATATTCTATTACCTTCGATGATATTAGATACTCAGTTGACATGCCAGAGgtaacttcat ... gaatttgcagGAGATGAAAAGTCAAGGTGTTGTTGAAGACAAATTGGAGCTTCTGAAGGGG
EST: gi|352769487|gb|FQ468415.1|FQ468415
EST:     CATATTCTATTACCTTCGATGATATTAGATACTCAGTTGACATGCCAGAG                         GAGATGAAAAGTCAAGGTGTTGTTGAAGACAAATTGGAGCTTCTGAAGGGG
genomic: CATATTCTATTACCTTCGATGATATTAGATACTCAGTTGACATGCCAGAGgtaacttcat ... gaatttgcagGAGATGAAAAGTCAAGGTGTTGTTGAAGACAAATTGGAGCTTCTGAAGGGG
EST: gi|352777385|gb|FQ474019.1|FQ474019
EST:     CATATTCTATTACCTTCGATGATATTAGATACTCAGTTGACATGCCAGAG                         GAGATGAAAAGTCAAGGTGTTGTTGAAGACAAATTGGAGCTTCTGAAGGGG
genomic: CATATTCTATTACCTTCGATGATATTAGATACTCAGTTGACATGCCAGAGgtaacttcat ... gaatttgcagGAGATGAAAAGTCAAGGTGTTGTTGAAGACAAATTGGAGCTTCTGAAGGGG
EST: gi|161717623|gb|FC066272.1|FC066272
EST:     ATTACCTTCGATGATATTAGATACTCAGTTGACATGCCAGAG                         GAGATGAAAAGTCAAGGTGTCGTTGAAGACAAATTGGAGCTTCTGAAGGGG
genomic: ATTACCTTCGATGATATTAGATACTCAGTTGACATGCCAGAGgtaacttcat ... gaatttgcagGAGATGAAAAGTCAAGGTGTTGTTGAAGACAAATTGGAGCTTCTGAAGGGG
EST: gi|34548882|gb|CF517114.1|CF517114
EST:     CATATTCTATTACCTTCGATGATATTAGATACTCAGTTGACATGCCAGAG                         GAGATGAAAAGTCAAGGTGTCGTTGAAGACAAATTGGAGCTTCTGAAGGGG
genomic: CATATTCTATTACCTTCGATGATATTAGATACTCAGTTGACATGCCAGAGgtaacttcat ... gaatttgcagGAGATGAAAAGTCAAGGTGTTGTTGAAGACAAATTGGAGCTTCTGAAGGGG