Sequence
atgc intronic sequence ATGC exonic sequenceGTGGCTCTTGCAGAAAAAACAGCTGTGTTGTTCACAAAAGATGGGGATCAGCATAACAACCTTCATGACATGCAGTGCATGTGgtatgtccttttccacttgattgtaactgtgtgcattatggagttgcccctgctaaatgtttacaatgttattcgttgaaag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g05110.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA13G43760.1 (Glycine max), 5'ss of exon 16
GTGGCTCTTGCAGAAAAAACAGCTGTGTTGTTCACAAAAGATGGGGATCAGCATAACAACCTTCATGACATGCAGTGCATGTGgtatgtccttttccacttga------ttgtaactgtgtgcattat-ggagttgcccctgctaaatgtttacaatgttattcgttgaaag
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GTCGCTTTGGCAGAAAAAACTGCTGTGTTGTTCACAAAAGATGGTGATCAGCACAACAACCTACATGATATGCAGTGCATGTGgtctgtatctaatgatgtgtaatattctgtacttgctagcaatattatggtttcatttggtaacacattgtaacatttgtattttgaag
upper sequence: Vv09s0002g05110.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA15G01580.1 (Glycine max), 5'ss of exon 16
GTGGCTCTTGCAGAAAAAACAGCTGTGTTGTTCACAAAAGATGGGGATCAGCATAACAACCTTCATGACATGCAGTGCATGTGgtatgtccttttccacttg----at--tgtaactgtgtgcattat-ggagttgcccctgctaaatgtttacaatgttattcgttgaaag
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GTGGCTTTGGCAGAAAAAACTGCTGTGTTGTTCACAAAAGATGGTGATCAACACAACAACCTGCATGATATGCAGTGCATGTGgtttgtatctaatcatgtgtaatatcatgtacttgcaagcaatattatggtttcattttgtaacacattgtaacatttatattttgaag
upper sequence: Vv09s0002g05110.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA08G22180.1 (Glycine max), 5'ss of exon 16
GTGGCTCTTGCAGAAAAAACAGCTGTGTTGTTCACAAAAGATGGGGATCAGCATAACAACCTTCATGACATGCAGTGCATGTGgtatgtccttttccacttgattgtaactgtgtgcattatggagttgcccctgctaaatgt-ttacaatgttat-----tcgttgaaag
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GTGGCTTTGGCTGAAAAAACTGCTGTATTGTTCACAAAAGATGGGGATCAACACAATAACCTTCATGACATGCAGTGCATGTGgttggtatataatgatattttaatattt-tgcacatcaaacgaatattgtggtttaatttcttaacatgtcacatctacctttggaag
upper sequence: Vv09s0002g05110.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA07G03850.1 (Glycine max), 5'ss of exon 16
GTGGCTCTTGCAGAAAAAACAGCTGTGTTGTTCACAAAAGATGGGGATCAGCATAACAACCTTCATGACATGCAGTGCATGTGgtatgtccttttccacttgattgtaactgtgtgcattatggagttgcccctgctaaatgt-ttacaatgttat-----tcgttgaaag
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GTGGCATTGGCTGAAAAAACTGCTGTATTGTTCACAAAAGATGGGGATCAACACAATAACCTTCATGACATGCAGTGCATGTGgttggtatataatgatattttaatattt-tgcacatcaaacgaatattgtggtttaatttcttgacatgtcacatctacctttggaag
upper sequence: Vv09s0002g05110.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: EFJ36800 (Selaginella moellendorffii), 5'ss of exon 15
-----------------GTGGCTCTTGCAGAAAAAACAGCTGTGTTGTTCACAAAAGATGGGGATCAGCATAACAACCTTCATGACATGCAGTGCATGTGgtatgtccttttccacttgattgtaactgtgtgcattatggagttgcccctgctaaatgtttacaatgttattcgttgaaag
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TGTTGCAAGCCGACCAGGTTGAACTTGCCGAGAAAACTGCCGCGCTCTTCACCAAGGATGGCGATCAACATAACAATCTGTATGACATGCAGTGCATGTGgtaagtatttttt-------ttgtg-ttttagatgctctaaaagtcctcgccttag--------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161720397|gb|FC070189.1|FC070189EST: TAACAACCTTCATGACATGCAGTGCATGTG GTATGAACTTGCTTCTGGCGAAAGTTACTTCCGCCAAGGTGATCTTGGACG
genomic: TAACAACCTTCATGACATGCAGTGCATGTGgtatgtcctt ... tcgttgaaagGTATGAACTTGCTTCTGGCGAAAGTTACTTCCGGCAAGGTGATCTTGGACG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGGCTCTTGCAGAAAAAACAGCTGTGTTGTTCACAAAAGATGGGGATCAGCATAACAACCTTCATGACATGCAGTGCATGTGgtatgtccttttccacttgattgtaactgtgtgcattatggagttgcccctgctaaatgtttacaatgttattcgttgaaag
- - - - - - - - - - - - - - - - - - AAGATG