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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAACCACAATGTTTCATTTGGACCGGCCTATGTATTTGTTGGGATATCTAGCTAATCAAAGCCGGGTGTATCTCATAGACAAAGAGTTCAAgtgagtggacttttggcagaaagggggagtggagggtggttgttgtattgctaacatctttattattaagttggtttttccttttcaatgcag

Basic information

species Vitis vinifera
transcript Vv09s0002g04810.t01
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: LOC_Os06g05180.1 (Oryza sativa), 5'ss of exon 16
GTAACCACAATGTTTCATTTGGACCGGCCTATGTATTTGTTGGGATATCTAGCTAATCAAAGCCGGGTGTATCTCATAGACAAAGAGTTCAAgtgagtggacttttggcagaaagggggagtggagggtggttgttgtattgctaacatctttattattaagttggtttttccttttcaatgcag
|| ||||| |||| ||| ||||| || |||||||| ||||||||||||||||| ||||||||||| || ||||| || ||||| || |||||||| ||   |||            |  | |   |  || || ||||    ||    | |  ||| || |  |    | |  || |   |||||
GTCACCACGATGTATCACTTGGATCGCCCTATGTACTTGTTGGGATATCTAGCGAATCAAAGCCGAGTTTATCTTATTGACAAGGAATTCAAgtgtgttttctt------------gataatactgcctgcttattgt----ctggtgt-tgaattcttgaactaacatatttttcttgttgcag

upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GRMZM2G443953_T03 (Zea mays), 5'ss of exon 17
GTAACCACAATGTTTCATTTGGACCGGCCTATGTATTTGTTGGGATATCTAGCTAATCAAAGCCGGGTGTATCTCATAGACAAAGAGTTCAAgtgagtggacttttggcagaaagggggagtggagggtggttgttgtattgctaacatctttattattaagttggtttttccttttcaatgcag
|| || ||||||||||| ||||| |||||||||||||| || |||||||| ||||| ||||| || || ||||| || ||||| || || |||| ||  | | |   ||| |       | |   |     || ||  ||        | |   |||| |      |||||   || ||      
GTTACTACAATGTTTCACTTGGATCGGCCTATGTATTTATTAGGATATCTTGCTAACCAAAGTCGTGTATATCTTATTGACAAGGAATTTAAgtaagcag-catgcagcatacct----acttctgatc--ttcttacatgatgtgtttttgggttatgacaacaatttttttattacag-----

upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 16
GTAACCACAATGTTTCATTTGGACCGGCCTATGTATTTGTTGGGATATCTAGCTAATCAAAGCCGGGTGTATCTCATAGACAAAGAGTTCAAgtgagtggacttttggcagaaagggggagtggagggtggttgttgtat-tgctaacatcttt-attattaagttggtttttccttttcaatgcag
|| || ||||||| ||||||||| || |||||||| |||||||||||| | || || ||||| || || ||||| || ||||| ||||| ||||  ||   ||       ||||       |         |||| | || || |||  ||| | | ||  || | | ||  | |            
GTCACTACAATGTATCATTTGGATCGCCCTATGTACTTGTTGGGATATATTGCGAACCAAAGTCGAGTTTATCTTATTGACAAGGAGTTGAAgtatgttttctc------gaaaacaatgcttcctttcctttgtagcatctgttaatttctctgactaacaaatagcttggtacag----------

upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GRMZM2G095348_T01 (Zea mays), 5'ss of exon 16
GTAACCACAATGTTTCATTTGGACCGGCCTATGTATTTGTTGGGATATCTAGCTAATCAAAGCCGGGTGTATCTCATAGACAAAGAGTTCAAgtgagtggacttttggcagaaagggggagtggagggtggttgttgtattgctaacatctttattattaagttggtttttccttttcaatgcag
|| || ||||||| ||||||||| || ||||||||  | ||||||||||| || || ||||| || || ||||| || ||||| ||||| ||||| |    ||||    | ||      | ||     |   | |||||       | | || |||  |  |       |      |  || |||
GTCACTACAATGTATCATTTGGATCGCCCTATGTACCTATTGGGATATCTTGCGAACCAAAGTCGAGTTTATCTTATTGACAAGGAGTTTAAgtgcg----ctttctctaaaac-----aatgtttcctttcttttgtaacatctgc-tgttaatttctgtgactaacatataagcttgatacag

upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA07G03890.2 (Glycine max), 5'ss of exon 5
GTAACCACAATGTTTCATTTGGACCGGCCTATGTATTTGTTGGGATATCTAGCTAATCAAAGCCGGGTGTATCTCATAGACAAAGAGTTCAAgtgagtggacttttggcagaaagggggagtggagggtggttgttgtattgctaacatctttattattaagttggtttttccttttcaatgcag
|| || |||||||||||||||||||| |||||||| |||||||||||||| || |  |||||   ||| ||| | ||||||||||| ||||||| ||||||    |||     |              |   ||  ||  | || |  | |||  |  |   ||   | |   |  |||      
GTTACTACAATGTTTCATTTGGACCGTCCTATGTACTTGTTGGGATATCTTGCCAGCCAAAGTAAGGTCTATTTGATAGACAAAGAATTCAAgtaagtggatcaatggtttgcattattcaaaatctctcaatgcagtggtcctgattttttttcttcttttttaactgtgt-tactcag-----

upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA15G01680.1 (Glycine max), 5'ss of exon 16
GTAACCACAATGTTTCATTTGGACCGGCCTATGTATTTGTTGGGATATCTAGCTAATCAAAGCCGGGTGTATCTCATAGACAAAGAGTTCAAgtgagtgga-cttttggcagaa--agggggagtggagggtggttgttgtattgctaacatctttattattaagttggtttttccttttcaatgcag
||||| || ||||||||||||||||| |||||||| |||||||||||||| || || ||||| || || ||| | || ||||||||||| |||| |||| | ||| ||   | |  |     |||      | |   |  | |||   |  | | | ||  | | ||| ||||  |            
GTAACTACGATGTTTCATTTGGACCGCCCTATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAAgtaagtgaaacttctgcttggattattcaaagttttaaattgcaataatcttgactatttttctgtttatcaattgtttttctcag----------

upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA08G22140.1 (Glycine max), 5'ss of exon 16
GTAACCACAATGTTTCATTTGGACCGGCCTATGTATTTGTTGGGATATCTAGCTAATCAAAGCCGGGTGTATCTCATAGACAAAGAGTTCAAgtgagtggacttttggcagaaagggggagtggagggtggttgttgtattgctaacatctttattattaagttggtttttccttttcaatgcag
|| || |||||||||||||||||||| |||||||| |||||||||||||| || |  |||||   ||| ||| | || |||||||| ||||||| ||||||    |||     |              |   ||  ||| | || |     ||||| || |  || |||   |            
GTTACTACAATGTTTCATTTGGACCGTCCTATGTACTTGTTGGGATATCTTGCCAGCCAAAGTAAGGTCTATTTGATGGACAAAGAATTCAAgtaagtggatcaatggtttgcattattcaaaatatctcaatgcagtaatcctga-----ttattttttaactgttttactcag----------

upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA13G43680.2 (Glycine max), 5'ss of exon 16
GTAACCACAATGTTTCATTTGGACCGGCCTATGTATTTGTTGGGATATCTAGCTAATCAAAGCCGGGTGTATCTCATAGACAAAGAGTTCAAgtgagtggacttttggcagaaagggggagtggagggtggttgttgtattgctaacatctttattattaagttggtttttccttttcaatgcag
||||| || ||||||||||||||||| || ||||| |||||||||||||| || || ||||| || || ||| | || ||||||||||| |||| |||| |  ||  ||    |         |       |||  ||| |  | ||  ||||  | || |  |   ||||  || |||      
GTAACTACGATGTTTCATTTGGACCGCCCCATGTACTTGTTGGGATATCTTGCAAACCAAAGTCGTGTTTATTTGATTGACAAAGAGTTTAAgtaagtgaaacttctgcttggattattcaaagttttaaattgcagtaatcttgactacttttctgttta--tcaattttttttctcag-----

upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 20
GTAACCACAATGTTTCATTTGGACCGGCCTATGTATTTGTTGGGATATCTAGCTAATCAAAGCCGGGTGTATCTCATAGACAAAGAGTTCAAgtgagtggacttttggcagaaagggggagtggagggtggttgttgtattgctaacatctttattattaagttggtttttccttttcaatgcag
||||| ||||||| |||| ||||||| |||||||| |||||||| ||||| |||||||||||| |||| ||| | || |||||||||||||||| ||  ||  |||  | |  | |     |  |   || ||  |   || || || ||| | |        || ||                 
GTAACTACAATGTATCATCTGGACCGTCCTATGTACTTGTTGGGTTATCTCGCTAATCAAAGCAGGGTTTATTTGATTGACAAAGAGTTCAAgtaagcagatgttttactgttatgattgcta-acaatgttttgtaacttactgacttctgtgtccactttatgattacag-------------

upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: AT1G52360.2 (Arabidopsis thaliana), 5'ss of exon 16
GTAACCACAATGTTTCATTTGGACCGGCCTATGTATTTGTTGGGATATCTAGCTAATCAAAGCCGGGTGTATCTCATAGACAAAGAGTTCAAgtgagtggacttttggcagaaagggggagtggagggtggttgttgtattgctaacatctttattattaagttggtttttccttttcaatgcag
||||||||||||| |||||||||||| || |||||||||||||||||||| || | |||||| ||||| |   |  |||||||||| ||||||| ||||    || |        |   |    |  | | ||||| ||      |  | | |  |  |    |     |   || |  ||||||
GTAACCACAATGTATCATTTGGACCGCCCAATGTATTTGTTGGGATATCTTGCAAGTCAAAGTCGGGTTTTCTTGGTAGACAAAGAATTCAAgtaagtg---cttagatttgtgtgtttatataattgagattgttcta-----gaagtttctgatgctg---ttcccctgttttgtggatgcag

upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: AT3G15980.2 (Arabidopsis thaliana), 5'ss of exon 16
GTAACCACAATGTTTCATTTGGACCGGCCTATGTATTTGTTGGGATATCTAGCTAATCAAAGCCGGGTGTATCTCATAGACAAAGAGTTCAAgtgagtggacttttggcagaaagggggagtggagggtggttgttgtattgctaacatc-tttattatta-agttggtttttccttttcaatgcag
||||||||||||| |||||||||||| || ||||||||||| || ||| | || || ||||||||||| ||  |  |||||||||| |||||||  ||   | |||   | | | |   | | |||  || ||  | | ||||  ||||  |||  ||  | | ||   |||| |||   |||||||
GTAACCACAATGTATCATTTGGACCGCCCAATGTATTTGTTAGGCTATATTGCCAACCAAAGCCGGGTTTACTTGGTAGACAAAGAATTCAAgtacgtt--ccttt---atatatgtttatttgagactgttt--tatcttgcatacataatttgctaacatatttccctttttcttgggaatgcag

upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: EFJ36319 (Selaginella moellendorffii), 5'ss of exon 11
GTAACCACAATGTTTCATTTGGACCGGCCTATGTATTTGTTGGGATATCTAGCTAATCAAAGCCGGGTGTATCTCATAGACAAAGAGTTCAAgtgagtggacttttggcagaaagggggagtggagggtggt--tgttgtattgctaacatctttattattaagttggtttttccttttcaatgcag
||||| || |||| |||  |||||  ||| ||||||||| | || ||||| || ||||||||||| |||||||| || ||||| |||||||||| ||||   ||| | |    | |     |||    |  |  |||   ||| |                                          
GTAACTACTATGTATCACCTGGACAAGCCAATGTATTTGCTTGGCTATCTGGCAAATCAAAGCCGAGTGTATCTGATCGACAAGGAGTTCAAgtaagtg--ttttcgacgatcatgaacgatggctaatcctcctgtgaaattacag----------------------------------------

upper sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: EFJ09529 (Selaginella moellendorffii), 5'ss of exon 11
GTAACCACAATGTTTCATTTGGACCGGCCTATGTATTTGTTGGGATATCTAGCTAATCAAAGCCGGGTGTATCTCATAGACAAAGAGTTCAAgtgagtggacttttggcagaaagggggagtggagggtggttgttgtattgctaacatctttattattaagttggtttttccttttcaatgcag
||||| || |||| |||  |||||  ||| ||||||||| | || ||||| || ||||||||||| |||||||| || ||||| |||||||||| ||||   ||||  |      |   | || | | ||| |  |       | | ||                                    
GTAACTACTATGTATCACCTGGACAAGCCAATGTATTTGCTTGGCTATCTGGCAAATCAAAGCCGAGTGTATCTGATCGACAAGGAGTTCAAgtaagtg--ttttttacttttctgatca-tgaacgatggctaatcctcctgtgaaattacag-------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351030017|gb|FQ430759.1|FQ430759
EST:     GATATCTAGCTAATCAAAGCCGGGTGTATCTCATAGACAAAGAGTTTCA-                         TGTTATGGGATACACGTTACTTCTCAGT
genomic: GATATCTAGCTAATCAAAGCCGGGTGTATCTCATAGACAAAGAGTT-CAAgtgagtggac ... ttcaatgcagTGTCATGGGATACACGTTACTTCTCAGT
EST: gi|110728301|gb|EE103751.1|EE103751
EST:     GGATATCTAGCTAATCAAAGCCGGGTGTATCTCATAGACAAAGAGTTCAA                         TGTCATGGGATACACGTTACTTCTCAGTTTGATTGAGTATAAGACTCTTGT
genomic: GGATATCTAGCTAATCAAAGCCGGGTGTATCTCATAGACAAAGAGTTCAAgtgagtggac ... ttcaatgcagTGTCATGGGATACACGTTACTTCTCAGTTTGATTGAGTACAAGACTCTTGT
EST: gi|161716849|gb|FC068107.1|FC068107
EST:     GGATATCTAGCTAATCAAAGCCGGGTGTATCTCATAGACAAAGAGTTCAA                         TGTTATGGGATACACGTTACTTCTCAGTTTGATTGAGTATAAGACTCTTGT
genomic: GGATATCTAGCTAATCAAAGCCGGGTGTATCTCATAGACAAAGAGTTCAAgtgagtggac ... ttcaatgcagTGTCATGGGATACACGTTACTTCTCAGTTTGATTGAGTACAAGACTCTTGT