Sequence
atgc intronic sequence ATGC exonic sequenceCTGCTACTGATGAAGAGAGGAGGGCAAGTGATATATTCAGGACCTCTGGGCCGAAATTCCCACAAGATCATTGAATACTTTGAGgtacctcattttcctgaaacccagtcttttcaaaaggaggagaatggactaatctgatcccaccattgttattttatcgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g03640.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA08G21540.2 (Glycine max), 5'ss of exon 19
CTGCTACTGATGAAGAGAGGAGGGCAAGTGATATATTCAGGACCTCTGGGCCGAAATTCCCACAAGATCATTGAATACTTTGAGgtacctcattttcctga--aacccagtcttttcaaaaggaggagaatggacta----atctgatcccaccattgttattttatcgcag
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CTTTTGTTGATGAAAAGAGGAGGACAAGTGATCTACTCAGGACCATTAGGCCGAAATTCCCACAAGATTACGGAATACTTTGAGgtattacaacaaactgattatatttatttgatcatgtactttaacatagggtttagtatcaagtttcatcccatgtccttggtcacag
upper sequence: Vv09s0002g03640.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA07G01860.1 (Glycine max), 5'ss of exon 18
CTGCTACTGATGAAGAGAGGAGGGCAAGTGATATATTCAGGACCTCTGGGCCGAAATTCCCACAAGATCATTGAATACTTTGAGgtacctcattttcctgaaacccagtcttttcaaaaggag-----gagaatggacta--atctgatcccaccattgttattttatcgcag
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CTTTTGTTGATGAAAAGAGGAGGGCAAGTGATCTACTCAGGACCATTAGGCCGAAACTCCCACAAGATTGTAGAATACTTTGAGgtattaaaaacaaactgattacatttatttgatcatgtactttaacataaggtttagtatcaagtttcatcccatgtccttggtcacag
upper sequence: Vv09s0002g03640.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA15G02220.1 (Glycine max), 5'ss of exon 18
CTGCTACTGATGAAGAGAGGAGGGCAAGTGATATATTCAGGACCTCTGGGCCGAAATTCCCACAAGATCATTGAATACTTTGAGgtacctcattttcctgaaacccagtcttttcaaaaggaggagaatggactaatctgat--cccaccattgttattttatcgcag------------------
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TTGTTGTTGATGAAGAGAGGAGGGCAAGTGATCTACTCAGGACCATTAGGAAGGAATTCACACAAGATTATAGAATATTTTGAGgtattacaataaaataattatatatatatatatatatatatcaaatcatgtatcaaaggattcaagtttaatatctaattccatgttcattcgtggtcaaag
upper sequence: Vv09s0002g03640.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA13G43140.1 (Glycine max), 5'ss of exon 17
CTGCTACTGATGAAGAGAGGAGGGCAAGTGATATATTCAGGACCTCTGGGCCGAAATTCCCACAAGATCATTGAATACTTTGAGgtacctc---------attttcctgaaacc----cagtcttttcaa-------aaggaggagaatggactaatctgatcccaccattgtt--attttatcgcag-------------
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TTGTTGTTGATGAAGAGAGGAGGACAAGTGATCTACTCAGGACCATTAGGAAGGAATTCACTTAGGATTATAGAATATTTTGAGgtattacaacaaaacaattatgtatatatttttttaattttatcaaatcatgtaacggggagttcaagtatatatgttcaaatcaacatctaatttcatgttcatttgtggtcaaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161721191|gb|FC070409.1|FC070409EST: ATTCAGGACCTCTGGGCCGAAATTCCCACAAGATCATTGAATACTTTGAG GCGATTCCCCAAGTCCCGAAAATTAAAGAAAAGTATAACCCAGCAACATGG
genomic: ATTCAGGACCTCTGGGCCGAAATTCCCACAAGATCATTGAATACTTTGAGgtacctcatt ... tttatcgcagGCGATTCCCCAAGTCCCGAAAATTAAAGAAAAGTATAACCCAGCAACATGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGCTACTGATGAAGAGAGGAGGGCAAGTGATATATTCAGGACCTCTGGGCCGAAATTCCCACAAGATCATTGAATACTTTGAGgtacctcattttcctgaaacccagtcttttcaaaaggaggagaatggactaatctgatcccaccattgttattttatcgcag
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