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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAGCTTCTAAAGCCTTTTTTGCAGGCTTTACCAATTCCATTTTCAATGCTCCAATGCTCTTCTTTGACTCTACCCCAGTTGGGCGTATTTTGACCCGAgtaagattatcttcttttctttcagaataacctcaggaaccatactcttttatgtgcctgctgaagttcaatcttgcag

Basic information

species Vitis vinifera
transcript Vv09s0002g02430.t01
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g02430.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA08G20770.2 (Glycine max), 5'ss of exon 4
AAAAGCTTCTAAAGCCTTTTTTGCAGGCTTTACCAATTCCATTTTCAATGCTCCAATGCTCTTCTTTGACTCTACCCCAGTTGGGCGTATTTTGACCCGAgtaagattatcttcttttctttcagaataacctcaggaaccatactcttttatgtgcctgctgaagttcaatcttgcag-----------------------
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AAAAGCTTCTACAGCCTTCTTCAACAGTTTCACAACTGCTATCTTCAATGCTCCTATGTTGTTCTTTGACTCAACCCCTGTGGGAAGGATTTTAACCCGAgtaagatttcattcccaatggaaaagaaaatctaaacaatttccgctcattac-tatttaatcatcttcaaaattttgatcattttttttcctctctttcag