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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACCACAATGTGAATATCAATGTTGCTGTGCAGACGGATAATGGACTCTTTGTCCCCGTCATCAAGgtgggttatttctcagtttgtttataattgaaacagtttatgcttttagttccaataaaagtttatttaacacaaaatcataccatgaaatttgcag

Basic information

species Vitis vinifera
transcript Vv09s0002g01800.t01
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g01800.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: LOC_Os06g01630.5 (Oryza sativa), 5'ss of exon 16
GTACCACAATGTGAATATCAATGTTGCTGTGCAGACGGATAATGGACTCTTTGTCCCCGTCATCAAGgtgggttatttctcagtttgtttataattgaaacagtttatgcttttagttccaataaaagtttatttaacacaaaatcataccatgaaatttgcag
 |||||||||||||| |||||||||||||| || || ||  ||||  | ||||| ||||| || | |||  |  |||| |     || || |  || ||| |  |||| |    |  |  ||      ||  ||| |||                         
ATACCACAATGTGAACATCAATGTTGCTGTACAAACTGAGGATGGCTTGTTTGTTCCCGTAATAAGGgtatgccatttatttccatggtttt--tttaaaaaaattattcagc-atctttaacttgtattgtttttacag------------------------

upper sequence: Vv09s0002g01800.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: LOC_Os07g22720.2 (Oryza sativa), 5'ss of exon 15
GTACCACAATGTGAATATCAATGTTGCTGTGCAGACGGATAATGGACTCTTTGTCCCCGTCATCAAGgtgggttatttctcagtttgtttataattgaaacagtttatgcttttagttccaataaaagtttatttaacacaaaatcataccatgaaatttgcag
 |||||||| ||||| |||||||||||||| ||||| ||  ||||||| ||||| || || |||| |||  || ||  || |  |||| || |  ||    ||   ||| || ||  |          |||  ||    ||                       
ATACCACAACGTGAACATCAATGTTGCTGTACAGACTGAGCATGGACTGTTTGTTCCAGTAATCAGGgttagtaat--ctaaacttgtcta-atctgtgtaagaaaatgtttctaact----------tttgcttgttgcag----------------------

upper sequence: Vv09s0002g01800.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA16G00590.1 (Glycine max), 5'ss of exon 15
GTACCACAATGTGAATATCAATGTTGCTGTGCAGACGGATAATGGACTCTTTGTCCCCGTCATCAAGgtgggttatttctcagtttgtttataattgaaacagtttatgctttta----gttccaataaaagtttatttaacacaaaatc---ataccatgaaatttgcag
||| || ||||||||||| ||||||||||||||||| |||||||| |||||||| || ||  ||| |||| |  |   |    |||   |||     | ||| ||   || ||||    |  |      | || | |||    |  | |    | |  || |||| |    
GTATCATAATGTGAATATTAATGTTGCTGTGCAGACAGATAATGGGCTCTTTGTTCCAGTTGTCAGGgtgagcaagggcctctttttaatatttcaaatacaattacagcctttataaggggcgttcccaggtctctttggttcggatttggaagaaaataaaatct----

upper sequence: Vv09s0002g01800.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA07G03930.2 (Glycine max), 5'ss of exon 15
GTACCACAATGTGAATATCAATGTTGCTGTGCAGACGGATAATGGACTCTTTGTCCCCGTCATCAAGgtgggttatttctcagtttgtttataattgaaaca-gtttatgcttttagttccaataaaagtttatttaacacaaaatcatac-catgaaatttgcag
|||  | ||||||||||| ||||||||||||||||| ||||| || |||||||| || ||||||| |||| |  |   |  |  || || ||| || ||| |   ||| |   ||  ||||||| | || |   | |     |  |  ||  ||| | || |||||
GTATAATAATGTGAATATTAATGTTGCTGTGCAGACTGATAACGGGCTCTTTGTTCCAGTCATCAGGgtgagcaagggc--atctttttaatatttcaaatacaattacggcctttattccaatcacaggtc-ctaactttgaccttgtattcataatatatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22008294|gb|BQ793328.1|BQ793328
EST:     TCCCCGTCATCAGG                         GACGCAGACAAGAAAGGTCTGTCCAAGATTTCTGAAGAGGTCAAGCAGTTG
genomic: TCCCCGTCATCAAGgtgggttatt ... aaatttgcagGACGCAGACAAGAAAGGTCTGTCCAAGATTTCTGAAGAGGTCAAGCAGTTG
EST: gi|110407843|gb|EC973460.1|EC973460
EST:     TCAATGTTGCTGTGCAGACGGATAATGGACTCTTTGTCCCCGTCATCAAG                         GACGCAGACAAGAAAGGTCTGTCCAAGATTTCTGAAGAGGTCAAGCAGTTG
genomic: TCAATGTTGCTGTGCAGACGGATAATGGACTCTTTGTCCCCGTCATCAAGgtgggttatt ... aaatttgcagGACGCAGACAAGAAAGGTCTGTCCAAGATTTCTGAAGAGGTCAAGCAGTTG
EST: gi|22009486|gb|BQ794520.1|BQ794520
EST:     TCAATGTTGCTGTGCAGACGGATAATGGACTCTTTGTCCCCGTCATCAGG                         GACGCAGACAAGAAAGGTCTGTCCAAGATTTCTGAAGAGGTCAAGCAGTTG
genomic: TCAATGTTGCTGTGCAGACGGATAATGGACTCTTTGTCCCCGTCATCAAGgtgggttatt ... aaatttgcagGACGCAGACAAGAAAGGTCTGTCCAAGATTTCTGAAGAGGTCAAGCAGTTG
EST: gi|33405959|gb|CF211586.1|CF211586
EST:     TCAATGTTGCTGTGCAGACGGATAATGGACTCTTTGTCCCCGTCATCAAG                         GACGCAGACAAGAAAGGTCTGTCCAAGATTTCTGAAGAGGTCAAGCAGTTG
genomic: TCAATGTTGCTGTGCAGACGGATAATGGACTCTTTGTCCCCGTCATCAAGgtgggttatt ... aaatttgcagGACGCAGACAAGAAAGGTCTGTCCAAGATTTCTGAAGAGGTCAAGCAGTTG
EST: gi|161714484|gb|FC064459.1|FC064459
EST:     TCAATGTTGCTGTGCAGACGGATAATGGACTCTTTGTCCCCGTCATCAAG                         GACGCAGACAAGAAAGGTCTGTCCAAGATTTCTGAAGAGGTCAAGCAGTTG
genomic: TCAATGTTGCTGTGCAGACGGATAATGGACTCTTTGTCCCCGTCATCAAGgtgggttatt ... aaatttgcagGACGCAGACAAGAAAGGTCTGTCCAAGATTTCTGAAGAGGTCAAGCAGTTG
EST: gi|32250355|gb|CD716174.1|CD716174
EST:     TCAATGTTGCTGTGCAGACGGATAATGGACTCTTTGTCCCCGTCATCAGG                         GACGCAGACAAGAAAGGTCTGTCCAAGATTTCTGAAGAGGTCAAGCAGTTG
genomic: TCAATGTTGCTGTGCAGACGGATAATGGACTCTTTGTCCCCGTCATCAAGgtgggttatt ... aaatttgcagGACGCAGACAAGAAAGGTCTGTCCAAGATTTCTGAAGAGGTCAAGCAGTTG
EST: gi|22009599|gb|BQ794633.1|BQ794633
EST:     TCAATGTTGCTGTGCAGACGGATAATGGACTCTTTGTCCCCGTCATCAGG                         GACGCAGACAAGAAAGGTCTGTCCAAGATTTCTGAAGAGGTCAAGCAGTTG
genomic: TCAATGTTGCTGTGCAGACGGATAATGGACTCTTTGTCCCCGTCATCAAGgtgggttatt ... aaatttgcagGACGCAGACAAGAAAGGTCTGTCCAAGATTTCTGAAGAGGTCAAGCAGTTG
EST: gi|30132039|gb|CB917378.1|CB917378
EST:     TCAATGTTGCTGTGCAGACGGATAATGGACTCTTTGTCCCCGTCATCAGG                         GACGCAGACAAGAAAGGTCTGTCCAAGATTTCTGAAGAGGTCAAGCAGTTG
genomic: TCAATGTTGCTGTGCAGACGGATAATGGACTCTTTGTCCCCGTCATCAAGgtgggttatt ... aaatttgcagGACGCAGACAAGAAAGGTCTGTCCAAGATTTCTGAAGAGGTCAAGCAGTTG