Sequence
atgc intronic sequence ATGC exonic sequenceTTTCCTTCGGGGCCTCAATGTTTCCCTCTCTACAGATGATCCACTACAAATCCACCTAACAAAAGAACCCTTGGTGGAAGAATACAGCATAGCTGCTTCTgtaagctctctctctctctctctctctctcttccatcagggtattagggattgatctggtactttgtttatgataattcctcatcttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0105g00570.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: LOC_Os05g28180.3 (Oryza sativa), 5'ss of exon 8
TTTCCTTCGGGGCCTCAATGTTTCCCTCTCTACAGATGATCCACTACAAATCCACCTAACAAAAGAACCCTTGGTGGAAGAATACAGCATAGCTGCTTCTgtaagctctctctctctctctctctctctcttccatcagggtat-tagggattgatctg-gtactt-tgtttatgataattcctcatcttgcag----------
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TTTCCAACGAGGCCTGAATGTTTCCCTGTCAACGGATGATCCATTGCAAATTCACCTGACAAAAGAGCCATTGGTGGAAGAATACAGCATTGCTGCTTCAgtactccctctttccctctcccctcaccctattcatct---tatgcagacactaatgtacatacttatgtttat-atatgtgcatgtacaagacatacatgaat
upper sequence: Vv08s0105g00570.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GRMZM2G416667_T03 (Zea mays), 5'ss of exon 17
TTTCCTTCGGGGCCTCAATGTTTCCCTCTCTACAGATGATCCACTACAAATCCACCTAACAAAAGAACCCTTGGTGGAAGAATACAGCATAGCTGCTTCTgta--agctctctctctctctctctctctctcttccatcagggtattagggattgatctggtactttgtttatgataattcctcatcttgcag-------------------------------------------------------------------------------
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CTTCCAACGAGGTCTGAATGTCTCATTATCTACGGATGACCCTTTGCAAATTCACCTGACAAAAGAACCATTGGTGGAAGAATACAGCATTGCTGCTTCGgtactcgctacttccctcgcttttttgcgccttttgattgttctttcacacatgcagcacgagctttgtgtgc-acgtgtatgcagcacacacctttacgcatagatactattgtacccacgccaaaagggacgagtgactaatgtccattactccattttgattgtttcag
upper sequence: Vv08s0105g00570.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA03G07460.1 (Glycine max), 5'ss of exon 16
TTTCCTTCGGGGCCTCAATGTTTCCCTCTCTACAGATGATCCACTACAAATCCACCTAACAAAAGAACCCTTGGTGGAAGAATACAGCATAGCTGCTTCTgtaagctctctctctctctctctctctctcttccatcagggtattagggattgat-ctggtactttgtttatgataattcctcatcttgcag
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CTTCTTACGGGGTCTGAATGTGTCACTTTCTACTGATGATCCTCTCCAAATTCACTTAACAAAGGAACCATTGGTTGAAGAATATAGCATAGCTGCTTCTgtgagctctctctctctctctctctctctgtgca--tgtgatataaacaagcaatgctcacagccaggatataaa----tcttactttacag
upper sequence: Vv08s0105g00570.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA01G29470.2 (Glycine max), 5'ss of exon 17
TTTCCTTCGGGGCCTCAATGTTTCCCTCTCTACAGATGATCCACTACAAATCCACCTAACAAAAGAACCCTTGGTGGAAGAATACAGCATAGCTGCTTCTgtaagctctctctctctctctctctctctcttcc---------atcagggtattagggattgatc--tggtactt-tgtttatgata-attcctcatcttgcag
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CTTCTTACGGGGTCTGAATGTGTCACTTTCTACTGATGATCCTCTCCAAATTCACTTAACAAAGGAACCATTGGTTGAAGAATATAGCATAGCTGCTTCTgtgagctctctgtctctctctctccccccccccccccctctcaatctgggcatggcatatgaacaagcaatgctcacagccaggacataattcttactttacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122690987|gb|EC965565.1|EC965565EST: TCCACCTAACAAAAGAACCCTTGGTGGAAGAATACAGCATAGCTGCTTCT GTATGGAGGCTGAGTTCATGCGATTTATGTGAAATTGCCCGTAATTCAGTC
genomic: TCCACCTAACAAAAGAACCCTTGGTGGAAGAATACAGCATAGCTGCTTCTgtaagctctc ... catcttgcagGTATGGAGGCTGAGTTCATGCGATTTATGTGAAATTGCCCGTAATTCAGTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTCCTTCGGGGCCTCAATGTTTCCCTCTCTACAGATGATCCACTACAAATCCACCTAACAAAAGAACCCTTGGTGGAAGAATACAGCATAGCTGCTTCTgtaagctctctctctctctctctctctctcttccatcagggtattagggattgatctggtactttgtttatgataattcctcatcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT