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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACTTCTCTCTGCAGCAGATGATAATGAAGAAATATTAGCTAGAAGAGAAGAAAGGGAAAAATTTGCATTGGATCACATCTCAAAATGCCAGCACTCATgtgtgtcctttattcttttcaaaagatttttgctacagtttttgcttcttttttttttttggaactattctgattatgaattgttttcttttcag

Basic information

species Vitis vinifera
transcript Vv08s0058g00890.t01
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA09G41510.1 (Glycine max), 5'ss of exon 16
CCACTTCTCTCTGCAGCAGATGATAATGAAGAAATATTAGCTAGAAGAGAAGAAAGGGAAAAATTTGCATTGGATCACATCTCAAAATGCCAGCACTCATgtgtgtcctttattcttttcaaaagatttttgctacagtttttgcttcttttttttttttggaactattctgattatgaattgttttctttt--cag
|||||| |  |||| ||||||||||  |||||  ||| ||| ||||||||||| |||||||||||||||||||| |||||  ||||||||||||||||  || ||   ||  || |||       ||||||  || | ||  |    | | || |||   |  |      |||  |   | | |||| || |  |||
CCACTTTTAACTGCTGCAGATGATAGCGAAGAGGTATCAGCCAGAAGAGAAGAGAGGGAAAAATTTGCATTGGAGCACATAGCAAAATGCCAGCACTCTGgtttgaatttcttttttt-------attttt--tatatttagttaagcatgttctttacagatatctggttgacaacatactattttattctgtcag

upper sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA18G44210.1 (Glycine max), 5'ss of exon 16
CCACTTCTCTCTGCAGCAGATGATAATGAAGAAATATTAGCTAGAAGAGAAGAAAGGGAAAAATTTGCATTGGATCACATCTCAAAATGCCAGCACTCATgtgtgtcctttattcttttcaaaagatttttgctacagtttttgcttcttttttttttttggaactattctgattatgaattgttttctttt--cag
|||||| |  |||| ||||||||||  |||||   || ||| ||||||||||| |||||||||||||||||||| |||||    ||||||||||||||  || |||  |||  | |||        |||||   | | ||  |    | | || |||   |  |      |||  |    || |||| || |  |||
CCACTTTTAACTGCTGCAGATGATAGCGAAGAGGCATCAGCCAGAAGAGAAGAGAGGGAAAAATTTGCATTGGAGCACATAGGCAAATGCCAGCACTCTGgtttgtattttggttttt-------gtttttttaatatttaattaagcatgttctttacagatatctggttgacaacatgttattttattctgtcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71860965|gb|DT010020.1|DT010020
EST:     AGAAAGGGAAAAATTTGCATTGGATCACATCTCAAAATGCCAGCACTCAT                         CTGTAAGCAAGCTGAATAATCAAATTGCTAGCTGGGATACAAGATTTGAGG
genomic: AGAAAGGGAAAAATTTGCATTGGATCACATCTCAAAATGCCAGCACTCATgtgtgtcctt ... ttcttttcagCTGTAAGCAAGCTGAATAATCAAATTGCTAGCTGGGATACAAGATTTGAGG
EST: gi|71861670|gb|DT010725.1|DT010725
EST:     AGAAAGGGAAAAATTTGCATTGGATCACATCTCAAAATGCCAGCACTCAT                         CTGTAAGCAAGCTGAATAATCAAATTGCTAGCTGG
genomic: AGAAAGGGAAAAATTTGCATTGGATCACATCTCAAAATGCCAGCACTCATgtgtgtcctt ... ttcttttcagCTGTAAGCAAGCTGAATAATCAAATTGCTAGCTGG