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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAATTAAAGGGAGCAAGATGGTTCTCTTATGATGAACTCAAAAAGTGCACCAATAATTTCTCAGAAAGTAATGAGATTGGATCTGGGGGCTATGGCAAGgtaaattatccaagggcttggtcgactgttgagaaatctggctacacctaacttgctgattcctttcctggtcactttag

Basic information

species Vitis vinifera
transcript Vv08s0056g00100.t01
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0056g00100.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA08G34790.1 (Glycine max), 5'ss of exon 16
ACAATTAAAGGGAGCAAGATGGTTCTCTTATGATGAACTCAAAAAGTGCACCAATAATTTCTCAGAAAGTAATGAGATTGGATCTGGGGGCTATGGCAAGgtaaattatccaagggcttggtcgactgttgagaaatctggctacacctaacttgctgattcctttcctggtcactttag
|||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||| ||||| |||||||| || | ||| |||||||||||||||     |  |      || ||   | ||   || |     || |  |   ||  | ||||||||| |  | |||||||
ACAATTAAAGGGAGCAAGATGGTTCTCTTATGATGAGCTCAAAAAGTGCTCCAACAATTTCTCTGAAAGCAATGAGATAGGCTTTGGTGGCTATGGCAAGgtattgctttta------tgttcacttatttctaagttcttttaaatgt---ttaataattcctttc-tattgactttag

upper sequence: Vv08s0056g00100.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA16G18090.1 (Glycine max), 5'ss of exon 16
ACAATTAAAGGGAGCAAGATGGTTCTCTTATGATGAACTCAAAAAGTGCACCAATAATTTCTCAGAAAGTAATGAGATTGGATCTGGGGGCTATGGCAAGgtaaattatccaagggcttggtcgactgttgagaaatctggctacacctaacttgctgattcctttcctggtcactttag
|||||||||||||||||||||||||||||||||||| || ||||||||| |||| |||||||| ||||| |||||||| || | ||| |||||||||||||||  ||        |  || ||   | ||   || | |   || |  |   ||  | ||||| ||| |  | |||||||
ACAATTAAAGGGAGCAAGATGGTTCTCTTATGATGAGCTTAAAAAGTGCTCCAACAATTTCTCTGAAAGCAATGAGATAGGCTTTGGTGGCTATGGCAAGgta--ttgctt----gtatgttcacttatttctaagtttttgtaaatgt---ttaataattcccttc-tattgactttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33406477|gb|CF212104.1|CF212104
EST:     TAATTTCTCAGAAAGTAATGAGATTGGATCTGGGGGCTATGGCAAG                         GTTTATAGAGGAATGCTCTCTGGTGGACAAATAGTGGCGATCAAAAGAGCT
genomic: TAATTTCTCAGAAAGTAATGAGATTGGATCTGGGGGCTATGGCAAGgtaaattatc ... gtcactttagGTTTATAGAGGAATGCTCTCTGGTGGACAAATAGTGGCGATCAAAAGAGCT