Sequence
atgc intronic sequence ATGC exonic sequenceTGATGTTGTTGAGATGGCAAGCTATGCACCACTTTTTGTGAATTCCAATGACAGGACgtatgtctcctcattttcctactaaaaccttgccttcattatacatctatacttaaatcaatatttaaatttggaaaaattttctctcgttaaag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g00320.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: LOC_Os12g03530.1 (Oryza sativa), 5'ss of exon 13
TGATGTTGTTGAGATGGCAAGCTATGCACCACTTTTTGTGAATTCCAATGACAGGACgtatgtctcctca-ttttcctactaaaaccttgccttcattatacatctatacttaaatcaatatttaaatttggaaaaattttctctcgttaaag--
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TGATGTTGTTCAGATGGCAAGTTATGCACCACTCTTCGTAAATGACAATGACAGCACgttagtacctccagctttgctcct----ttttatttccaacgttcttgt-tggtcaca--agtacgcgagtttgactagaccttaatgtaatgatcag
upper sequence: Vv08s0040g00320.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: LOC_Os12g03470.5 (Oryza sativa), 5'ss of exon 14
-------------------------------------------TGATGTTGTTGAGATGGCAAGCTATGCACCACTTTTTGTGAATTCCAATGACAGGACgtatgtctcctcattttccta----ctaaaaccttgccttcatt-atacatctatacttaaatcaatatttaaatttggaaaaattttctctcgttaaag
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TGCAATGAGATATTTACTGTAACTTCTTGTTGGTTCTTTGCAGTGATGTTGTTCAGATGGCAAGTTATGCACCACTGTTCGTGAACAACAATGATCAAACgttagttttgatggctccatggtttctttatttgtgtttttgtttatttaacaagtactgtaataatgcttcaatc--aaacaatcag------------
upper sequence: Vv08s0040g00320.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: LOC_Os12g03470.2 (Oryza sativa), 5'ss of exon 15
TGATGTTGTTGAGATGGCAAGCTATGCACCACTTTTTGTGAATTCCAATGACAGGACgtatgtctcctcattttc----ctactaaaaccttgccttcatt-atacatctatacttaaatcaatatttaaatttggaaaaattttctctcgttaaag
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TGATGTTGTTCAGATGGCAAGTTATGCACCACTGTTCGTGAACAACAATGATCAAACgttagttttgatggctccatggtttctttatttgtgtttttgtttatttaacaagtactgtaataatgcttcaatc--aaacaatcag------------
upper sequence: Vv08s0040g00320.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: LOC_Os11g03730.3 (Oryza sativa), 5'ss of exon 15
TGATGTTGTTGAGATGGCAAGCTATGCACCACTTTTTGTGAATTCCAATGACAGGACgtatgtctcctcattttc----ctactaaaaccttgccttcatt-atacatctatacttaaatcaatatttaaatttggaaaaattttctctcgttaaag
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TGATGTTGTTCAGATGGCAAGTTATGCACCACTCTTCGTGAACAACAATGATCAAACgttagttttgatgactccatggtttctttatttgtgtttttgtttatttaacaagtactgtaataatgcttcaatc--aaacaatcag------------
upper sequence: Vv08s0040g00320.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GRMZM2G097277_T01 (Zea mays), 5'ss of exon 14
TGATGTTGTTGAGATGGCAAGCTATGCACCACTTTTTGTGAATTCCAATGACAGGACgtatgtctcctcattttcctactaaaaccttgccttcattatacat--ctatacttaaatcaatattta---aatttggaaa--aattttctctcgttaaag------------------------------------------------------------------------
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TGATGTGGTTGAGATGGCAAGCTGTGCACCCCTTTTTGTAAATGACAATGATCGCAGgtaaggacacaacaccttgagggagtgcctaagtgacatgacacaatgctagtcccttttcagtttccactgaacacgaacagtatcctcttctcgttttaacttcatatctgtttacttctgctatgagcttcaacaacccacataatctgaaaagagaacgtttgaaatcag
upper sequence: Vv08s0040g00320.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA03G27490.1 (Glycine max), 5'ss of exon 14
TGATGTTGTTGAGATGGCAAGCTATGCACCACTTTTTGTGAATTCCAATGACAGGACgtatgtctcctcattttcctactaaaaccttgccttcattatacatctatacttaaatcaatatttaaatttggaaaaattttctctcgttaaag----------
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TGATCATGTGATAATGGCTAGCTATGCGCCACTTTTTGTAAATGCAAATGACAGGATgtatgtgc-----ttttaccataaaatttctatcatctatccctctttattcataaacctatagataagacataagtggtatgctctttttgtgaaattattaaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33406071|gb|CF211698.1|CF211698EST: GTTGAGATGGCAAGCTATGCACCACTTTTTGTGAATTCCAATGACAGGAC CTGGAGCCCAGATGCAATCGTCTTCAATTCTTCCTTTGTGTATGGAACTCC
genomic: GTTGAGATGGCAAGCTATGCACCACTTTTTGTGAATTCCAATGACAGGACgtatgtctcc ... ctcgttaaagCTGGAGCCCAGATGCAATCGTCTTCAATTCTTCCTTTGTGTATGGAACTCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGATGTTGTTGAGATGGCAAGCTATGCACCACTTTTTGTGAATTCCAATGACAGGACgtatgtctcctcattttcctactaaaaccttgccttcattatacatctatacttaaatcaatatttaaatttggaaaaattttctctcgttaaag
- - - - - GAGATG
- - - - - - - - CAAGCT