Sequence
atgc intronic sequence ATGC exonic sequenceATACCATGTCGAACAGCAATGAGAGGGAGCTTTCCATTGAATGGCACATACTTCCAAGTTAATGAGgtaaaatccaattcctattgagctcccttacattcttttatgcacttcaaaaaaatttatttcaggttatattcctatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g03920.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA03G34860.2 (Glycine max), 5'ss of exon 19
ATACCATGTCGAACAGCAATGAGAGGGAGCTTTCCATTGAATGGCACATACTTCCAAGTTAATGAGgtaaaa-----tccaattcc--tattgagc-----tcccttacattcttttatgcacttcaa------aaaaatttatttcaggttatattcctatgcag
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ATACCATGTCGAACAGCTATGAGAGGGAGCTTTCCGCTAAATGGCACCTATTTTCAAGTCAACGAGgtaaaatagcgtggaatctcattatcaaatctttttcccttaaataaatatatatgtttttgtaatttaagaagtactaaaaacatgtcatttgaagcag
upper sequence: Vv08s0007g03920.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA13G21460.1 (Glycine max), 5'ss of exon 22
ATACCATGTCGAACAGCAATGAGAGGGAGCTTTCCATTGAATGGCACATACTTCCAAGTTAATGAGgtaaaatcc-----aattcctattg--agctcccttacattcttttatgcacttcaaaaaaattta----tttcaggttatattcct--atgcag
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ATACCATGTCGAACAGCTACACGGGGGAGCTTTCCACTGAATGGCACCTATTTCCAAGTCAATGAGgtaaaataatgtgaaattctgactgctaaatctcttttcctcttatacttgtttattgaaatttaagcagtaccaacctgtatcatttgaaccag
upper sequence: Vv08s0007g03920.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: PP1S480_4V6.1 (Physcomitrella patens), 5'ss of exon 15
ATACCATGTCGAACAGCAATGAGAGGGAGCTTTCCATTGAATGGCACATACTTCCAAGTTAATGAGgtaaaatccaattcct--------attgagctcccttacattcttttatgcacttcaaaaaaatttatttcaggttatattcctatgcag---------------------------------------------------------------------------------------------
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ATTCCATGTAAGACAGCCATGAGAGGATGGTTTCCATTGAACGGGACATACTTCCAAGTTAATGAGgtgcttctctatcgcgctgcagaaacaaagctttctca-attcttatgtgaattagatcgtactcattgttagtggaagttgatatctacaacccttgaaaaagttcgtggtattgaatcgtattgtaatattttagtgcaagtaatataccatcaaataagagatctgcctggctttggcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30299419|gb|CB976213.1|CB976213EST: CAATGAGAGGGAGCTTTCCATTGAATGGCACATACTTCCAAGTTAATGAG GTGTTTGCTGACCATGACTCCAGCCTTAACCCCATTGATGTTCCTAGGGCC
genomic: CAATGAGAGGGAGCTTTCCATTGAATGGCACATACTTCCAAGTTAATGAGgtaaaatcca ... tcctatgcagGTGTTTGCTGACCATGACTCCAGCCTTAACCCCATTGATGTTCCTAGGGCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATACCATGTCGAACAGCAATGAGAGGGAGCTTTCCATTGAATGGCACATACTTCCAAGTTAATGAGgtaaaatccaattcctattgagctcccttacattcttttatgcacttcaaaaaaatttatttcaggttatattcctatgcag
- - - - - - - - - - GAGAGG
- - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - GAGCTT