Sequence
atgc intronic sequence ATGC exonic sequenceTCTCATGGAATTGGCTCAAGACCGTAGAGGAGAGTTCAAAGAAATGAAATTTATCACTGAGAATAGAGCATCAATTACCTATGAATTACCCTTAGCAGAGgtaccttttcctattcaatcatccacttgctttgataaactgaaatgcagttgactagtaaattaatattgggtctccctaattttttggctgttgatagattgaattttctctggttttgaaattcattcacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA06G16700.1 (Glycine max), 5'ss of exon 16
TCTCATGGAATTGGCTCAAGACCGTAGAGGAGAGTTCAAAGAAATGAAATTTATCACTGAGAATAGAGCATCAATTACCTATGAATTACCCTTAGCAGAGgtaccttttcctattcaatcat-ccacttgctttgataaactgaaa--tgcagttgactagtaaattaatattgggtctccctaattttttggctgttgatagattgaattttctctggttttgaaattcattcacag
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ACTTATGGAACTGGCACAAGAAAGAAGAGGGCAGTTCAAAGAAATGAAATTTATTGCTGAAAATAGGGCATCAATCACGTATGAATTACCATTAGCAGAGgtaatctcttgcattagttcttgtcaattgaccctaaaaactcatgcttctgtttgactagttt-tggctctcaagcatctgaatctttttgaatgtcaattttgtag------------------------------
upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA04G33480.1 (Glycine max), 5'ss of exon 11
TCTCATGGAATTGGCTCAAGACCGTAGAGGAGAGTTCAAAGAAATGAAATTTATCACTGAGAATAGAGCATCAATTACCTATGAATTACCCTTAGCAGAGgtaccttttcctattcaatc--atccacttgctttgataaactgaaatgcagttgactagtaaattaatattgggtctccctaattttttggctgttgatagat-tgaattttctctggttttgaaattcattcacag
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-----------------------------GGCAGTTCAAAGAAATGAAATTTATTGCTGAAAATAGGGCATCAATCACGTATGAATTACCATTAGCAGAGgtaatctcttgcattagttcttgtctattgaccctaa-aaact----cgtgctt--ctgtttaactagttttggctctc---aagtatttgaatatttttgaatgtcaattttgtag---------------------
upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA04G38360.1 (Glycine max), 5'ss of exon 16
TCTCATGGAATTGGCTCAAGACCGTAGAGGAGAGTTCAAAGAAATGAAATTTATCACTGAGAATAGAGCATCAATTACCTATGAATTACCCTTAGCAGAGgtaccttttcctattcaatc--atccacttgctttgataaactgaaatgcagtt-gactagtaaattaatattgggtctccctaattttttggctgttgatagattgaattttctctggttttgaaattcattcacag
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ACTTATGGAACTGGCACAAGAAAGAAGAGGGCAGTTCAGAGAAATGAAATTTATTGCTGAAAATAGGGCATCAATCACGTATGAATTACCATTAGCAGAGgtaatctcttgcattagttcttgtctattgaccctaaaaactcgtgcttctgtttaactagttt-tggctctcaagtatctgaatctttttgaatgtcaattttgtag------------------------------
upper sequence: Vv07s0031g03050.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: AT5G08650.1 (Arabidopsis thaliana), 5'ss of exon 16
TCTCATGGAATTGGCTCAAGACCGTAGAGGAGAGTTCAAAGAAATGAAATTTATCACTGAGAATAGAGCATCAATTACCTATGAATTACCCTTAGCAGAGgtaccttttcctattcaatcatccacttgctttgataaactgaaatgcagttgactagtaaattaatattgggtctccctaattttttggctgttgatagattgaattttctctggttttgaaattcattcacag
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GCTTATGGAGCTCGCTCAAGAGAGGAGAGGGGAGTTCAAAGAAATGAAATATATAGCTGAGAACAGAGCTTCAATCCTCTATGAGTTACCTCTTGCAGAGgtgagatctc-tgcttgtgcaga-----gttaagataaccccaatgaaagtttagccatgtctc--tcttgattatgtaaactgatcttcttgttaatcg------ctccctgccattttgcag-----------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22010264|gb|BQ795298.1|BQ795298EST: TTATCACTGAGAATAGAGCATCAATTACCTATGAATTACCCTTAGCAGAG ATGGTAGGAGANNNNNNNGATCAGCTGAAGTCCAGAAGTAAAGGTTATGCT
genomic: TTATCACTGAGAATAGAGCATCAATTACCTATGAATTACCCTTAGCAGAGgtaccttttc ... tcattcacagATGGTAGGAGATTTTTTTGATCAGCTGAAGTCCAGAAGTAAAGGTTATGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTCATGGAATTGGCTCAAGACCGTAGAGGAGAGTTCAAAGAAATGAAATTTATCACTGAGAATAGAGCATCAATTACCTATGAATTACCCTTAGCAGAGgtaccttttcctattcaatcatccacttgctttgataaactgaaatgcagttgactagtaaattaatattgggtctccctaattttttggctgttgatagattgaattttctctggttttgaaattcattcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA