Sequence
atgc intronic sequence ATGC exonic sequenceGGCCTGAAAACAGGAATGTACTATCTACGGTCACGGGCTGCAGCTGATGCCATCAAATTTACCGTTGACACCTCTATTCTCCAGgtgattactggttaattgctatgtctttaccctctcagttaacttgtgtattttattgagatgtaaattcttctgttcgttggcaatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GRMZM2G340527_T01 (Zea mays), 5'ss of exon 16
GGCCTGAAAACAGGAATGTACTATCTACGGTCACGGGCTGCAGCTGATGCCATCAAATTTACCGTTGACACCTCTATTCTCCAGgtgatt----actggttaattgctatgtctttaccctctcagttaacttgtgt---attttattgagatgtaaattcttctgttcgttggcaatgcag-------------------------------------
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GGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCAATCAAGTTTACCGTCGATACCACACTTCTAAAGGAGAATGGGAATGGGgtatattttctttcctttagtcctagaatattttccctcaaaagttactaaaacataactcagcatgcacaatgaatctttttcctgaaaagttactaaaacatgactcaccatgtgcag
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GRMZM2G304362_T01 (Zea mays), 5'ss of exon 16
GGCCTGAAAACAGGAATGTACTATCTACGGTCACGGGCTGCAGCTGATGCCATCAAATTTACCGTTGACACCTCTATTCTCCAGgtgatt----actggttaattgctatgtctttaccctct-cagttaacttgtgtatttta---ttgagatgtaaattcttctgttcgttggcaatgcag-------------
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GGCCTGAAAACTGGAATGTACTATCTACGCACACGAGCTGCTGCTGATGCGATCAAGTTCACAGTGGATACCACGCTTCTGAAGGAGAATGGGAACGGGgtattgcccctatttttctttccttcagttctgcaatgttttttttcctcaggttactagggacacggctcaccatgaacaccacttgcacacgcag
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA06G15350.1 (Glycine max), 5'ss of exon 16
GGCCTGAAAACAGGAATGTACTATCTACGGTCACGGGCTGCAGCTGATGCCATCAAATTTACCGTTGACACCTCTATTCTCCAGgtgattactggttaattgctatgtctttaccctctcagttaacttgtgtattttattgagatgtaaattcttctgttcgttggcaatgcag
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GGTCTAAAAACTGGAATGTATTATCTTCGATCACGTGCTGCAGCTGATGCTATTAAGTTCACCGTTGACACCTCTGCTCTCAGAgtaataag-aattcattattatcaggttttgcattaatgtgatttgcacattttttt---atgtgaaatatt---tttgctgtgaatgcag
upper sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: PP1S195_46V6.1 (Physcomitrella patens), 5'ss of exon 8
----------------GGCCTGAAAACAGGAATGTACTATCTACGGTCACGGGCTGCAGCTGATGCCATCAAATTTACCGTTGACACCTCTATTCTCCAGgtgat---tactggttaattgctatg----tctttacc-ctct-cagttaacttgtgtattttattgagatgtaaattcttctgttcgttg--gcaatgcag
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CTACAGCTGGACCAAAGGTTTGAAAACAGGAATGTACTATTTACGGTCCAGAGCCGCAGCAGATGCCATCAAATTTACAGTAGATCAAAGTAGCATCAAGgtaagacatacaccctcgttcttgtaataatcagtagtactctgctccttgcacagatgcttttctacattgtggtgacatgatttggttattgtgctgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122691528|gb|EC979583.1|EC979583EST: GGGCTGCAGCTGATGCCATCAAATTTACTGTTGACACCTCTATTCTCCAG GAAAGGACCAAGACAGCAGATGATGATGATACCAAAATGGCACAAATGGTA
genomic: GGGCTGCAGCTGATGCCATCAAATTTACCGTTGACACCTCTATTCTCCAGgtgattactg ... ggcaatgcagGAAAGGACCAAGACAGCAGATGATGATGATACCAAAATGGCACAAATGGTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCCTGAAAACAGGAATGTACTATCTACGGTCACGGGCTGCAGCTGATGCCATCAAATTTACCGTTGACACCTCTATTCTCCAGgtgattactggttaattgctatgtctttaccctctcagttaacttgtgtattttattgagatgtaaattcttctgttcgttggcaatgcag
- - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - GCTGAT