Sequence
atgc intronic sequence ATGC exonic sequenceGCGTGGTCGAAGTGGCCGCCAAGGGGATCCAGGAAGTTCCCGTTTCTTCCTTAGTCTTGAAGATAACATCTTTCGAATTTTTGGGGGAGACAGAATTCAGgtttagcctatggttttaaagtctattcgccactacagtttaggatttgcttgttaaagggttctcatttttgctaattgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g02610.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: LOC_Os01g21820.1 (Oryza sativa), 5'ss of exon 14
GCGTGGTCGAAGTGGCCGCCAAGGGGATCCAGGAAGTTCCCGTTTCTTCCTTAGTCTTGAAGATAACATCTTTCGAATTTTTGGGGGAGACAGAATTCAGgtttagcctatggttttaaagtctattcgcc--------actacagtttag-gatttgcttgttaaagggttctcatttttgctaattgtag--------
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CCGTGGTCGAAGTGGCAGGCAAGGGGATCCTGGGAGCTCTCGGTTCTTTCTTAGTCTTGAGGATAATATATTCCGAATTTTTGGAGGTGACAGGATACAGgtttgtgttatcttccctatttccatttcctctctctggatgacattgcaacaatatcaatattgtagggctgcaaatgtacatcattgcatccaaagta
upper sequence: Vv07s0005g02610.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA10G27810.1 (Glycine max), 5'ss of exon 16
GCGTGGTCGAAGTGGCCGCCAAGGGGATCCAGGAAGTTCCCGTTTCTTCCTTAGTCTTGAAGATAACATCTTTCGAATTTTTGGGGGAGACAGAATTCAGgtttagcctatggttttaaagtctattcgccactacagtttaggatttgcttg-ttaaagggttctcatttttgctaattgtag
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GCGTGGTCGAAGTGGCAGACAAGGAGATCCAGGAAGCTCCCGCTTTTTCTTAAGTCTTGAAGATAACATATTTCGTATTTTTGGTGGAGATCGAATTCAGgtaatgcatttgttgtg---------ttgctgctacacttggaattttgattggccagaacttggttaatattgtgatgtgtag
upper sequence: Vv07s0005g02610.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA02G01060.1 (Glycine max), 5'ss of exon 16
GCGTGGTCGAAGTGGCCGCCAAGGGGATCCAGGAAGTTCCCGTTTCTTCCTTAGTCTTGAAGATAACATCTTTCGAATTTTTGGGGGAGACAGAATTCAGgtttagcctatggttttaaagtctattcgccactacagtttaggatttgcttgttaaagggttc-tcatttttgctaattgtag
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GCGTGGTCGAAGTGGCAGACAAGGAGATCCGGGAAGCTCACGCTTTTTCTTAAGTCTTGAAGATAACATATTTCGTATTTTTGGTGGAGATCGAATTCAGgta------atgcatttattgtgt---tgctgctaca-cttggaatttgattgcccaaaacttagttaatattgtgatatgtag
upper sequence: Vv07s0005g02610.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: AT4G01800.1 (Arabidopsis thaliana), 5'ss of exon 15
GCGTGGTCGAAGTGGCCGCCAAGGGGATCCAGGAAGTTCCCGTTTCTTCCTTAGTCTTGAAGATAACATCTTTCGAATTTTTGGGGGAGACAGAATTCAGgtttagcctatggttttaaagtctattcgccactacagtttaggatttgcttgttaaagggttctcatttttgctaattgtag
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GCGTGGGCGAAGTGGCCGGCAAGGGGATCCTGGAAGTTCCCGATTCTTCCTTAGTCTTGAAGATAACATATTCCGCATTTTTGGTGGAGATCGGATTCAGgt--gacatttgtatctacaatttattgattcttctggaaaataatcgtctaaacatagttgccgtataactcttag------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110720527|gb|EE096525.1|EE096525EST: TTAGTCTTGAAGATAACATCTTTCGAATTTTTGGGGGAGACAGAATTCAG GGTTTGATGACCGCTTTTAGAGTTGAAGACCTACCGATTGAGTCCAAGATG
genomic: TTAGTCTTGAAGATAACATCTTTCGAATTTTTGGGGGAGACAGAATTCAGgtttagccta ... ctaattgtagGGTTTGATGACCGCTTTTAGAGTTGAAGACCTACCCATTGAGTCCAAGATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCGTGGTCGAAGTGGCCGCCAAGGGGATCCAGGAAGTTCCCGTTTCTTCCTTAGTCTTGAAGATAACATCTTTCGAATTTTTGGGGGAGACAGAATTCAGgtttagcctatggttttaaagtctattcgccactacagtttaggatttgcttgttaaagggttctcatttttgctaattgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA