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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATATAAATATGAGGACTCAAAAAATATCAGTTCTTTTGAGGAAGAGGTTCACAACCCCAAACTGGGTGAAGgttagtacaattaaccacagtccttgagtttaaaagaaatttctagcatgtgaaaattttgatatccatttcttttctaattgttctgccgaatatttaacag

Basic information

species Vitis vinifera
transcript Vv07s0005g01440.t01
intron # 16
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30324169|gb|CD007431.1|CD007431
EST:     AAATATCAGTTCTTTTGAGGAAGAGGTTCACAACCCCAAACTGGGTGAAG                         CACAAGGAGCCCAGAGAAGTCCATATGTTTGTCGATTTGTTTCTTCAAGAG
genomic: AAATATCAGTTCTTTTGAGGAAGAGGTTCACAACCCCAAACTGGGTGAAGgttagtacaa ... tatttaacagCACAAGGAGCCCAGAGAAGTCCATATGTTTGTCGATTTGTTTCTTCAAGAG
EST: gi|71889645|gb|DT038700.1|DT038700
EST:     AAATATCAGTTCTTTTGAGGAAGAGGTTCACAACCCCAAACTGGGTGAAG                         CACAAGGAGCCCAGAGAAGTCCATATGTTTGTCGATTTGTTTCTTCAAGAG
genomic: AAATATCAGTTCTTTTGAGGAAGAGGTTCACAACCCCAAACTGGGTGAAGgttagtacaa ... tatttaacagCACAAGGAGCCCAGAGAAGTCCATATGTTTGTCGATTTGTTTCTTCAAGAG
EST: gi|30323970|gb|CD007232.1|CD007232
EST:     AAATATCAGTTCTTTTGAGGAAGAGGTTCACAACCCCAAACTGGGTGAAG                         CACAAGGAGCCCAGAGAAGTCCATATGTTTGTCGATTTGTTTCTCCGAGAG
genomic: AAATATCAGTTCTTTTGAGGAAGAGGTTCACAACCCCAAACTGGGTGAAGgttagtacaa ... tatttaacagCACAAGGAGCCCAGAGAAGTCCATATGTTTGTCGATTTGTTTCTTCAAGAG
EST: gi|27579832|gb|CB002527.1|CB002527
EST:     AAATATCAGTTCTTTTGAGGAAGAGGTTCACAACCCCAAACTGGGTGAAG                         CACAAGGAGCCCAGAGAAGTCCATATGTTTGTCGATTTGTTTCTTCAAGAG
genomic: AAATATCAGTTCTTTTGAGGAAGAGGTTCACAACCCCAAACTGGGTGAAGgttagtacaa ... tatttaacagCACAAGGAGCCCAGAGAAGTCCATATGTTTGTCGATTTGTTTCTTCAAGAG
EST: gi|32267461|gb|CD716424.1|CD716424
EST:     AAATATCAGTTCTTTTGAGGAAGAGGTTCACAACCCCAAACTGGGTGAAG                         CACAAGGAGCCCAGAGAAGTCCATATGTTTGTCGATTTGTTTCTTCAAGAG
genomic: AAATATCAGTTCTTTTGAGGAAGAGGTTCACAACCCCAAACTGGGTGAAGgttagtacaa ... tatttaacagCACAAGGAGCCCAGAGAAGTCCATATGTTTGTCGATTTGTTTCTTCAAGAG
EST: gi|30325708|gb|CD008970.1|CD008970
EST:     AAATATCAGTTCTTTTGAGGAAGAGGTTCACAACCCCAAACTGGGTGAAG                         CACAAGGAGCCCAGAGAAGTCCATATGTTTGTCGATTTGTTTCTTCAAGAG
genomic: AAATATCAGTTCTTTTGAGGAAGAGGTTCACAACCCCAAACTGGGTGAAGgttagtacaa ... tatttaacagCACAAGGAGCCCAGAGAAGTCCATATGTTTGTCGATTTGTTTCTTCAAGAG
EST: gi|71855179|gb|DT004234.1|DT004234
EST:     AAATATCAGTTCTTTTGAGGAAGAGGTTCACAACCCCAAACTGGGTGAAG                         CACAAGGAGCCCAGAGAAGTCCATATGTTTGTCGATTTGTTTCTTCAAGAG
genomic: AAATATCAGTTCTTTTGAGGAAGAGGTTCACAACCCCAAACTGGGTGAAGgttagtacaa ... tatttaacagCACAAGGAGCCCAGAGAAGTCCATATGTTTGTCGATTTGTTTCTTCAAGAG
EST: gi|30327626|gb|CD010888.1|CD010888
EST:     AAATATCAGTTCTTTTGAGGAAGAGGTTCACAACCCCAAACTGGGTGAAG                         CACAAGGAGCCCAGAGAAGTCCATATGTTTGTCGATTTGTTTCTTCAAGAG
genomic: AAATATCAGTTCTTTTGAGGAAGAGGTTCACAACCCCAAACTGGGTGAAGgttagtacaa ... tatttaacagCACAAGGAGCCCAGAGAAGTCCATATGTTTGTCGATTTGTTTCTTCAAGAG
EST: gi|32269349|gb|CD718508.1|CD718508
EST:     AAATATCAGTTCTTTTGAGGAAGAGGTTCACAACCCCAAACTGGGTGAAG                         CACAAGGAGCCCAGAGAAGTCCATATGTTTGTCGATTTGTTTCTTCAAGAG
genomic: AAATATCAGTTCTTTTGAGGAAGAGGTTCACAACCCCAAACTGGGTGAAGgttagtacaa ... tatttaacagCACAAGGAGCCCAGAGAAGTCCATATGTTTGTCGATTTGTTTCTTCAAGAG
EST: gi|32269302|gb|CD718461.1|CD718461
EST:     AAATATCAGTTCTTTTGAGGAAGAGGTTCACAACCCCAAACTGGGTGAAG                         CACAAGGAGCCCAGAGAAGTCCATATGTTTGTCGATTTGTTTCTTCAAGAG
genomic: AAATATCAGTTCTTTTGAGGAAGAGGTTCACAACCCCAAACTGGGTGAAGgttagtacaa ... tatttaacagCACAAGGAGCCCAGAGAAGTCCATATGTTTGTCGATTTGTTTCTTCAAGAG
EST: gi|32248389|gb|CD714208.1|CD714208
EST:     AAATATCAGTTCTTTTGAGGAAGAGGTTCACAACCCCAAACTGGGTGAAG                         CACAAGGAGCCCAGAGAAGTCCATATGTTTGTCGATTTGTTTCTTCAAGAG
genomic: AAATATCAGTTCTTTTGAGGAAGAGGTTCACAACCCCAAACTGGGTGAAGgttagtacaa ... tatttaacagCACAAGGAGCCCAGAGAAGTCCATATGTTTGTCGATTTGTTTCTTCAAGAG
EST: gi|32267654|gb|CD716617.1|CD716617
EST:     AAATATCAGTTCTTTTGAGGAAGAGGTTCACAACCCCAAACTGGGTGAAG                         CACAAGGAGCCCAGAGAAGTCCATATGTTTGTCGATTTGTTTCTTCAAGAG
genomic: AAATATCAGTTCTTTTGAGGAAGAGGTTCACAACCCCAAACTGGGTGAAGgttagtacaa ... tatttaacagCACAAGGAGCCCAGAGAAGTCCATATGTTTGTCGATTTGTTTCTTCAAGAG
EST: gi|32268218|gb|CD717377.1|CD717377
EST:     AAATATCAGTTCTTTTGAGGAAGAGGTTCACAACCCCAAACTGGGTGAAG                         CACAAGGAGCCCAGAGAAGTCCATATGTTTGTCGATTTGTTTCTTCAAGAG
genomic: AAATATCAGTTCTTTTGAGGAAGAGGTTCACAACCCCAAACTGGGTGAAGgttagtacaa ... tatttaacagCACAAGGAGCCCAGAGAAGTCCATATGTTTGTCGATTTGTTTCTTCAAGAG
EST: gi|32248728|gb|CD714547.1|CD714547
EST:     AAATATCAGTTCTTTTGAGGAAGAGGTTCACAACCCCAAACTGGGTGAAG                         CACAAGGAGCCCAGAGAAGTCCATATGTTTGTCGATTTGTTTCTTCAAGAG
genomic: AAATATCAGTTCTTTTGAGGAAGAGGTTCACAACCCCAAACTGGGTGAAGgttagtacaa ... tatttaacagCACAAGGAGCCCAGAGAAGTCCATATGTTTGTCGATTTGTTTCTTCAAGAG
EST: gi|32270860|gb|CD720019.1|CD720019
EST:     AAATATCAGTTCTTTTGAGGAAGAGGTTCACAACCCCAAACTGGGTGAAG                         CACAAGGAGCCCAGAGAAGTCCATATGTTTGTCGATTTGTTTCTTCAAGAG
genomic: AAATATCAGTTCTTTTGAGGAAGAGGTTCACAACCCCAAACTGGGTGAAGgttagtacaa ... tatttaacagCACAAGGAGCCCAGAGAAGTCCATATGTTTGTCGATTTGTTTCTTCAAGAG
EST: gi|32268333|gb|CD717492.1|CD717492
EST:     AAATATCAGTTCTTTTGAGGAAGAGGTTCACAACCCCAAACTGGGTGAAG                         CACAAGGAGCCCAGAGAAGTCCATATGTTTGTCGATTTGTTTCTTCAAGAG
genomic: AAATATCAGTTCTTTTGAGGAAGAGGTTCACAACCCCAAACTGGGTGAAGgttagtacaa ... tatttaacagCACAAGGAGCCCAGAGAAGTCCATATGTTTGTCGATTTGTTTCTTCAAGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TATATAAATATGAGGACTCAAAAAATATCAGTTCTTTTGAGGAAGAGGTTCACAACCCCAAACTGGGTGAAGgttagtacaattaaccacagtccttgagtttaaaagaaatttctagcatgtgaaaattttgatatccatttcttttctaattgttctgccgaatatttaacag

- - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - AAGAGG