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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACTAATGCTTGTCACATCTTTGAACCCTgtgagtttctgttctatccctgtgttcattcctacacttctcgattactgtgctctggacaataacttatgctgttgcttctgtttcag

Basic information

species Vitis vinifera
transcript Vv07s0005g00880.t01
intron # 16
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352794271|gb|FQ479513.1|FQ479513
EST:     TCACTAATGCTTGTCACATCTTTGAACCCT                         AAAATTGGTTATGATAATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAG
genomic: TCACTAATGCTTGTCACATCTTTGAACCCTgtgagtttct ... tctgtttcagAAAATTGGTTATGATAATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAG
EST: gi|352776696|gb|FQ465494.1|FQ465494
EST:     TCACTAATGCTTGTCACATCTTTGAACCCT                         AAAATTGGTTATGATAATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAG
genomic: TCACTAATGCTTGTCACATCTTTGAACCCTgtgagtttct ... tctgtttcagAAAATTGGTTATGATAATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAG
EST: gi|352773567|gb|FQ472349.1|FQ472349
EST:     TCACTAATGCTTGTCACATCTTTGAACCCT                         AAAATTGGTTATGATAATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAG
genomic: TCACTAATGCTTGTCACATCTTTGAACCCTgtgagtttct ... tctgtttcagAAAATTGGTTATGATAATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAG
EST: gi|352781327|gb|FQ467773.1|FQ467773
EST:     TCACTAATGCTTGTCACATCTTTGAACCCT                         AAAATTGGTTATGATAATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAG
genomic: TCACTAATGCTTGTCACATCTTTGAACCCTgtgagtttct ... tctgtttcagAAAATTGGTTATGATAATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAG
EST: gi|33402398|gb|CF208025.1|CF208025
EST:     TCACTAATGCTTGTCACATCTTTGAACCCT                         AAAATTGGTTATGATAATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAG
genomic: TCACTAATGCTTGTCACATCTTTGAACCCTgtgagtttct ... tctgtttcagAAAATTGGTTATGATAATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAG
EST: gi|110412847|gb|EC978610.1|EC978610
EST:     TCACTAATGCTTGTCACATCTTTGAACCCT                         AAAATTGGTTATGATAATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAG
genomic: TCACTAATGCTTGTCACATCTTTGAACCCTgtgagtttct ... tctgtttcagAAAATTGGTTATGATAATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAG
EST: gi|110363110|gb|EC926680.1|EC926680
EST:     TCACTAATGCTTGTCACATCTTTGAACCCT                         AAAATTGGTTATGATAATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAG
genomic: TCACTAATGCTTGTCACATCTTTGAACCCTgtgagtttct ... tctgtttcagAAAATTGGTTATGATAATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAG
EST: gi|352773938|gb|FQ473070.1|FQ473070
EST:     TCACTAATGCTTGTCACATCTTTGAACCCT                         AAAATTGGTTATGATAATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAG
genomic: TCACTAATGCTTGTCACATCTTTGAACCCTgtgagtttct ... tctgtttcagAAAATTGGTTATGATAATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAG
EST: gi|352778134|gb|FQ467187.1|FQ467187
EST:     TCACTAATGCTTGTCACATCTTTGAACCCT                         AAAATTGGTTATGATAATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAG
genomic: TCACTAATGCTTGTCACATCTTTGAACCCTgtgagtttct ... tctgtttcagAAAATTGGTTATGATAATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAG
EST: gi|352782337|gb|FQ470240.1|FQ470240
EST:     TCACTAATGCTTGTCACATCTTTGAACCCA                         AAAATTGGTTATGATAATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAG
genomic: TCACTAATGCTTGTCACATCTTTGAACCCTgtgagtttct ... tctgtttcagAAAATTGGTTATGATAATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAG
EST: gi|110407161|gb|EC972758.1|EC972758
EST:     TCACTAATGCTTGTCACATCTTTGAACCCT                         AAAATTGGTTATGATAATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAG
genomic: TCACTAATGCTTGTCACATCTTTGAACCCTgtgagtttct ... tctgtttcagAAAATTGGTTATGATAATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAG
EST: gi|352776926|gb|FQ474233.1|FQ474233
EST:     TCACTAATGCTTGTCACATCTTTGAACCCT                         AAAATTGGTTATGATAATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAG
genomic: TCACTAATGCTTGTCACATCTTTGAACCCTgtgagtttct ... tctgtttcagAAAATTGGTTATGATAATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAG
EST: gi|110361036|gb|EC924487.1|EC924487
EST:     TCACTAATGCTTGTCACATCTTTGAACCCT                         AAAATTGGTTATGATAATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAG
genomic: TCACTAATGCTTGTCACATCTTTGAACCCTgtgagtttct ... tctgtttcagAAAATTGGTTATGATAATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAG
EST: gi|110698892|gb|EE076910.1|EE076910
EST:     TCACTAATGCTTGTCACATCTTTGAACCCT                         AAAATTGGTTATGATAATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAG
genomic: TCACTAATGCTTGTCACATCTTTGAACCCTgtgagtttct ... tctgtttcagAAAATTGGTTATGATAATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGGAG
EST: gi|351045827|gb|FQ441012.1|FQ441012
EST:     TCACTAATGCTTGTCACATCTTTGAACCCT                         AAAATTGGTTATGATAATGCCGCTGCTGTTGCCAAAAAAGCCCATAAGG
genomic: TCACTAATGCTTGTCACATCTTTGAACCCTgtgagtttct ... tctgtttcagAAAATTGGTTATGATAATGCCGCTGCTGTTGCCAAGAAAGCCCATAAGG