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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCCCATATTCTTCGAAGAGTTATCAAGGATGTAGAGAAGTCTTTGCCTCCAAAAATTGAACGTATTCTTAGGGTTGAAATGTCCCCTCTTCAAAAACAgttagtattatccttaacttgtatgaagtagtatcatttctggttatatcagttttctctattctcacctggtacttacattcatag

Basic information

species Vitis vinifera
transcript Vv06s0009g03750.t01
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GRMZM2G010342_T01 (Zea mays), 5'ss of exon 15
GGCCCCATATTCTTCGAAGAGTTATCAAGGATGTAGAGAAGTCTTTGCCTCCAAAAATTGAACGTATTCTTAGGGTTGAAATGTCCCCTCTTCAAAAACAgttagta-ttatccttaacttgtatgaagtagtatcatttctggttatatcagttttctctatt--ctcacctggtacttacattcatag------------------------------------------------------------------------------------------------------------
|||| ||||||||  |  | ||||| || ||||| ||||||||||| ||||| ||||||||||| |||||  | || || ||||| || ||||| ||||||| |||| ||     | | ||   ||||       | | | |  ||| |  ||||||| |||||   |    |   ||  | |||| |||                                                                                                            
GGCCTCATATTCTAAGGCGGGTTATAAAAGATGTCGAGAAGTCTTTACCTCCTAAAATTGAACGGATTCTACGTGTCGAGATGTCACCCCTTCAGAAACAgtgagtacttcattctgattttcttgaa-------cctctttttttaaagaagttttc-ctattagtttggatcaaacccatattcttagacctttcgtttttttcctacaagctccaaatcctgcatggaccatggacctggagctataacttgctctgtttatacattgaggctaaacttttttgttttttactag

upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA02G45000.1 (Glycine max), 5'ss of exon 16
GGCCCCATATTCTTCGAAGAGTTATCAAGGATGTAGAGAAGTCTTTGCCTCCAAAAATTGAACGTATTCTTAGGGTTGAAATGTCCCCTCTTCAAAAACAgttagtattatccttaacttgtatgaagtagtatcatttctggttatatcagttttctctattctcacctggtacttacattcatag--------------
| || || || ||||||||||||||||| ||||| ||||| || || || || |||||||||||||| ||||||||||||||||| |||||||| ||||||| |||   ||  |||  |   |  || |  | || |||      |||  | | |  |   ||| |       | |    || ||                
GACCTCACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCATTACCCCCCAAAATTGAACGTATCCTTAGGGTTGAAATGTCTCCTCTTCAGAAACAgtaagtgcaatt-ttagttctgaaaaatt--tttcctttggaaaaatactattatcataagttcactttctaaattcctgttgatgtattccttcgtttag

upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA14G03780.1 (Glycine max), 5'ss of exon 16
GGCCCCATATTCTTCGAAGAGTTATCAAGGATGTAGAGAAGTCTTTGCCTCCAAAAATTGAACGTATTCTTAGGGTTGAAATGTCCCCTCTTCAAAAACAgttagtattatccttaacttgta------------tgaagtagtatcatttctggttatatcagttttctctattctcacctg-gtacttacattcatag
| || || || ||||||||||||||||| ||||| ||||| || || || || |||||||| ||||| ||||||||||||||||| |||||||| ||||||| |||   ||  |     || |            || |  | ||  |||   |  ||  |   ||||||  ||||        ||| |    |   |||
GACCTCACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCATTACCCCCCAAAATTGAGCGTATCCTTAGGGTTGAAATGTCGCCTCTTCAGAAACAgtaagtgcaattttagttctgaaatttttttcttttggaaaaatactattatcg--taagttcattttctaaattcctgttgatgtattcctttgtgtag

upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: AT2G13370.1 (Arabidopsis thaliana), 5'ss of exon 17
GGCCCCATATTCTTCGAAGAGTTATCAAGGATGTAGAGAAGTCTTTGCCTCCAAAAATTGAACGTATTCTTAGGGTTGAAATGTCCCCTCTTCAAAAACAgttagtattatccttaacttgta---tgaagtagtatcatttctggttatatcagtt-ttctctattctcacctggtacttacattcatag
| ||||||||||| ||| |||| || || ||||| || ||||| |||||||||||||| || ||||| || || ||||| |||||||||||||| ||||||| || || | | | | ||  ||   |  ||| | ||   ||    |  | | | || |  ||| || |    || ||             
GACCCCATATTCTACGACGAGTGATTAAAGATGTTGAAAAGTCGTTGCCTCCAAAAATCGAGCGTATACTAAGAGTTGAGATGTCCCCTCTTCAGAAACAgtaagcataa-cttcagctgatacttttgagtgg-atagctttaaatattgttacttatattctgttgttctgtgttag------------

upper sequence: Vv06s0009g03750.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: EFJ28029 (Selaginella moellendorffii), 5'ss of exon 15
GGCCCCATATTCTTCGAAGAGTTATCAAGGATGTAGAGAAGTCTTTGCCTCCAAAAATTGAACGTATTCTTAGGGTTGAAATGTCCCCTCTTCAAAAACAgt-tagtattatccttaacttgtatgaagtagtatcatttctggttatatcagttttctctattctcacctggtacttacattcatag
|||| ||| |  |  |||| || || ||||| || ||||| ||||||||||| ||||| || ||||||||||| || || ||||| || ||||||||||||| | |  ||    | |   |  | | ||||  ||| |   | |||   ||||                                   
GGCCACATTTGTTGAGAAGGGTGATAAAGGACGTGGAGAAATCTTTGCCTCCTAAAATCGAGCGTATTCTTAGAGTGGAGATGTCTCCACTTCAAAAACAgtatggggttcaaataagtgtccacgtagta--atcctcgttcgttt--tcag-----------------------------------