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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAATCAACCATTCTTAGATTGCTTTTCAGGTTTTTTGACGCTCAATGTGGAACTgtaagaagctatacttctcttctgtcattgtatgcaattgtacaatttttatctctatatattaacatctgtaattatcttgccaaccaagttttttggt...

Basic information

species Vitis vinifera
transcript Vv06s0004g08350.t01
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g08350.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA14G38800.1 (Glycine max), 5'ss of exon 13
GCAAATCAACCATTCTTAGATTGCTTTTCAGGTTTTTTGACGCTCAATGTGGAACTgtaagaagctatacttctcttctgtcattgtatgcaattgtacaatttttatctctatatat-taacatctgtaattatcttgccaaccaagttttttggt--
| ||||||||||||||||||||||| ||||| || |||||  |||| | ||||| |||||||    |  |      |||    |    ||   ||   | || ||   |   |||||| | |||  |    | ||| || |   ||| |    ||    
GAAAATCAACCATTCTTAGATTGCTATTCAGATTCTTTGATCCTCATTCTGGAAGTgtaagatatgaatcaatcgatctactctgtagtgagtttaagctatatt-gccatcatatatatgacacgtagtgtcatcctgtc--tcaattagactgagat

upper sequence: Vv06s0004g08350.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA02G40490.1 (Glycine max), 5'ss of exon 13
GCAAATCAACCATTCTTAGATTGCTTTTCAGGTTTTTTGACGCTCAATGTGGAACTgtaagaagctatacttctcttctgtcattgtatgcaattgtacaatttttatctctatatat-taacatctgtaattatcttgccaaccaagttttttggt
| ||||||||||||||||||||||| ||||| || || ||  |||| | ||||| |||||||    |  |   |  | |     || |   | ||  ||   | ||      |||||| | |||  ||   | ||| || |          |  | |
GAAAATCAACCATTCTTAGATTGCTGTTCAGATTCTTCGATCCTCATTTTGGAAGTgtaagatatgaatcaattgatttact-ctgcagtgagtttaacctatattgctatgatatatatgacacgtggtgtcatcatgtctcatttagactgagat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30256126|gb|CB971969.1|CB971969
EST:     CAACCATTCTTAGATTGCTTTTCAGGTTTTTTGACGCTCTTTGTGGAACT                         ATATGTATAGATGGAGAAGATATTCGAAAGGTTACTCTTGAAAGTCTTCGA
genomic: CAACCATTCTTAGATTGCTTTTCAGGTTTTTTGACGCTCAATGTGGAACTgtaagaagct ... ttcttgacagATATGTATAGATGGAGAAGATATTCGAAAGGTTACTCTTGAAAGTCTTCGA
EST: gi|18458309|gb|BM436587.1|BM436587
EST:     CAACCATTCTTAGATTGCTTTTCAGGTTTTTTGACGCTCAATGTGGAACT                         ATATGTATAGATGGAGAAGATATTCGAAAGGTTACTCTTGAAAGTCTTCGA
genomic: CAACCATTCTTAGATTGCTTTTCAGGTTTTTTGACGCTCAATGTGGAACTgtaagaagct ... ttcttgacagATATGTATAGATGGAGAAGATATTCGAAAGGTTACTCTTGAAAGTCTTCGA
EST: gi|110698612|gb|EE076310.1|EE076310
EST:     CAACCATTCTTAGATTGCTTTTCAGGTTTTTTGACGCTCAATGTGGAACT                         ATATGTATAGATGGAGAAGATATTCGAAAGGTTACTCTTGAAAGTCTTCGA
genomic: CAACCATTCTTAGATTGCTTTTCAGGTTTTTTGACGCTCAATGTGGAACTgtaagaagct ... ttcttgacagATATGTATAGATGGAGAAGATATTCGAAAGGTTACTCTTGAAAGTCTTCGA