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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTAGTGAGATTTTTGTGCATCAAATGATACATTCCATTGAATTTGTCCTGGGTGCAGTTTCAAATACGGCATCTTACCTCCGACTTTGGGCTTTGAGgtacagccatagtttccctctcattttagtcaagtttccatctgtttatattattatggtttagttgacatctcctactgttgttgcag

Basic information

species Vitis vinifera
transcript Vv06s0004g03450.t01
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g03450.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA13G40430.1 (Glycine max), 5'ss of exon 16
ATTTTAGTGAGATTTTTGTGCATCAAATGATACATTCCATTGAATTTGTCCTGGGTGCAGTTTCAAATACGGCATCTTACCTCCGACTTTGGGCTTTGAGgta----cagccatagtttccctctcattttagtcaagtttccatctgtttatattattatggtttagttgacatctcctactgttgttgcag
|||| |||||| | ||||| ||||||||||| ||| ||||||||||||| || ||| ||||||| ||||| ||||| || || || |||||||| || ||||     ||| |||  || | || ||||   | | || || | || | | |  ||| || |   || | |||  | |  |||     ||||||
ATTTCAGTGAGGTCTTTGTTCATCAAATGATCCATGCCATTGAATTTGTTCTAGGTTCAGTTTCTAATACAGCATCATATCTTCGTCTTTGGGCATTAAGgtttgctcagtcatgatt-ctctttcatcgcaatgaa-ttcctatat-tatggatttttgttccttggctgat-tttgttacca--attgcag

upper sequence: Vv06s0004g03450.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA12G07740.1 (Glycine max), 5'ss of exon 16
ATTTTAGTGAGATTTTTGTGCATCAAATGATACATTCCATTGAATTTGTCCTGGGTGCAGTTTCAAATACGGCATCTTACCTCCGACTTTGGGCTTTGAGgtacagcca-tagtttccctctcattttagtcaagtttccatctgtttatattattatggtttagttgacatctcctactgttgttgcag
|||| |||||| ||||||| || |||||||| || |||||||| ||||| || ||| ||||||||||||| || || || || ||||||||||| || ||||   | ||    |     |||||||  | |      |   | | |  | |  |||     || ||||| || |  |    |  ||||||
ATTTCAGTGAGGTTTTTGTTCACCAAATGATTCACTCCATTGAGTTTGTTCTAGGTTCAGTTTCAAATACAGCCTCATATCTACGACTTTGGGCATTAAGgtttggtcagctatgattgtctcattgcattgggtccttattatatcaaaaaaatttatcctttgttgatatttttttacctctttgcag

upper sequence: Vv06s0004g03450.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA11G15730.1 (Glycine max), 5'ss of exon 16
ATTTTAGTGAGATTTTTGTGCATCAAATGATACATTCCATTGAATTTGTCCTGGGTGCAGTTTCAAATACGGCATCTTACCTCCGACTTTGGGCTTTGAGgta----cagccatagtttccctctcattttagtcaagtttccatct-gtttatattattatggtttagttgacatctcct-actgttgttgcag
|||| |||||| | ||||| || |||||||| || |||||||| ||||| || ||| ||||||||||||| || || || || ||||||||||| || ||||     |||| ||  ||  |   | | ||   |   ||    || |  |  || || ||     || ||||| || |  | ||   | | ||||
ATTTCAGTGAGGTCTTTGTTCACCAAATGATTCACTCCATTGAGTTTGTTCTAGGTTCAGTTTCAAATACAGCCTCATATCTACGACTTTGGGCATTAAGgtttggtcagctatgattgtctcattaattacattgggtccttattttatcaattttttttatccttggttgatatttttttaccactat-gcag

upper sequence: Vv06s0004g03450.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA15G04970.1 (Glycine max), 5'ss of exon 16
ATTTTAGTGAGATTTTTGTGCATCAAATGATACATTCCATTGAATTTGTCCTGGGTGCAGTTTCAAATACGGCATCTTACCTCCGACTTTGGGCTTTGAGgta----cagccatagtttccctctcattttagtcaagtttccatctgtttatattattatggtttagttgacatctcctactgttgttgcag
|||| |||||| | ||||| || |||||||| ||  ||||||||||||| || ||| ||||||| ||||| ||||| || || || ||||||||  | ||||     ||| |||  || | || ||||   | | || || | || | | |  ||| || |   || | |||  | |  |||     ||||||
ATTTCAGTGAGGTCTTTGTTCACCAAATGATCCACGCCATTGAATTTGTTCTAGGTTCAGTTTCTAATACAGCATCATATCTTCGTCTTTGGGCACTAAGgtttgctcagtcatgatt-ctctttcatcgcaatgaa-ttcctatat-tatggatttttgttccttggctgat-tttattacca--attgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110429789|gb|EC996295.1|EC996295
EST:     GGTGCAGTTTCAAATACGGCATCTTACCTCCGACTTTGGGCTTTGAG                         CTTGGCCCACTCTGAATTGTCAACTGTTTTCTATGAGAAAGTCCTCCTCCT
genomic: GGTGCAGTTTCAAATACGGCATCTTACCTCCGACTTTGGGCTTTGAGgtacagccat ... gttgttgcagCTTGGCCCACTCTGAATTGTCAACTGTTTTCTATGAGAAAGTCCTCCTCCT
EST: gi|110383349|gb|EC947717.1|EC947717
EST:     CTGGGTGCAGTTTCAAATACGGCATCTTACCTCCGACTTTGGGCTTTGAG                         CTTGGCCCACTCTGAATTGTCAACTGTTTTCTATGAGAAAGTCCTCCTCCT
genomic: CTGGGTGCAGTTTCAAATACGGCATCTTACCTCCGACTTTGGGCTTTGAGgtacagccat ... gttgttgcagCTTGGCCCACTCTGAATTGTCAACTGTTTTCTATGAGAAAGTCCTCCTCCT