Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAAGTATTTGTGGCTTCTTTTTGATTTGGCTGCGGGTTCGGACAACCTTGTTGAAAATGGGCCATACAAgtaagtccatgcatacttgtacttttttctttttcttttttttttccccttcaattgattaaaaatccaaagcctatttgaactgaaacatctagcaattgaaataagatatcaatctcaattacaatagatggtaacagttacttgtttctatcatattctgttaaaaattctccctttacag

Basic information

species Vitis vinifera
transcript Vv05s0020g04650.t01
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g04650.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: LOC_Os01g56670.2 (Oryza sativa), 5'ss of exon 15
GTCAAGTATTTGTGGCTTCTTTTTGATTTGGCTGCGGGTTCGGACAACCTTGTTGAAAATGGGCCATACAAgtaagtcca----tgcatacttg-tacttttttctttttcttttttttttccccttcaattgattaaaaatccaaagcctatttgaactgaaacatctagcaattgaaataagatatcaatctcaattacaatagatggtaacagttacttgtttctatcatattctgttaaaaattctccctttacag
||||| ||| | ||||||||||||||||| ||||| ||  | || ||  ||||||||||||||||||| |||||||| |      | | | |   ||  ||    | ||| ||         || | |   | | |  ||||| |      |                                                                                                            
GTCAAATATCTCTGGCTTCTTTTTGATTTAGCTGCAGGCCCTGATAATATTGTTGAAAATGGGCCATATAAgtaagtacgacgccgtagattcaataagttcaattgtttattcagacgcatccttcctgcttactgtaaatcaactttgcag-----------------------------------------------------------------------------------------------------------

upper sequence: Vv05s0020g04650.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GRMZM2G173868_T02 (Zea mays), 5'ss of exon 14
GTCAAGTATTTGTGGCTTCTTTTTGATTTGGCTGCGGGTTCGGACAACCTTGTTGAAAATGGGCCATACAAgtaagtccatgcatacttgtacttttttctttttcttttttttttccccttcaattgattaaaaatccaaagc-ctatttgaactgaaacatctagcaattgaaataagatatcaatctcaattacaatagatggtaacagttacttgtttctatcatattctgttaaaaattctccctttacag
||||||||| | ||||||||||||||||| ||||| ||  | |||||  ||||||||||||| ||||| ||||||||  ||| | ||  | |     |   ||    | ||| ||    | |  | |  | | |  | ||  |    ||| |  ||| |                                                                                                 
GTCAAGTATCTCTGGCTTCTTTTTGATTTAGCTGCTGGCCCTGACAATATTGTTGAAAATGGACCATATAAgtaagt--atg-acaccagcatccagtaagttcaggtgtttattcagacatagagt--tcacagttacagtgtatcattggttctgcag------------------------------------------------------------------------------------------------

upper sequence: Vv05s0020g04650.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA10G32320.1 (Glycine max), 5'ss of exon 14
GTCAAGTATTTGTGGCTTCTTTTTGATTTGGCTGCGGGTTCGGACAACCTTGTTGAAAATGGGCCATACAAgtaagtccatgcatacttgtacttttttctttttcttttttttttccccttcaattgattaaaaatccaaagcctatttgaactgaaacatctagcaattgaaataagatatcaatctcaattacaatagatggtaacagttacttgtttctatcatattctgttaaaaattctccctttacag
||||||||| |||||||||| ||||||||||||| |||| | ||||| ||||| ||||||||||| ||||||| |||      || | | |       |     || |||  |        |  ||| |  | |||   || |    | |    | |  ||| |  |  | |||| |                                                                              
GTCAAGTATCTGTGGCTTCTGTTTGATTTGGCTGTGGGTCCTGACAATCTTGTGGAAAATGGGCCTTACAAgtgagtgagcttatgcatatttagcactgaaggtcatttactgcctgaactttatttacaacaaaattaaggtacttcttgtttta--catttttctgt-gaaacag-----------------------------------------------------------------------------