Sequence
atgc intronic sequence ATGC exonic sequenceGATGAGAACAAGTTTGACTTCAAGAAAATTGTCAGTGAAAACTGGATTGAGCCACCAAAAAGAGAGCGGAAGCGGAAgtaattgtgaattttcagttgccaacttatgttataattttatgtttttcattatcatttaagacatgtttccattttcttgtcctttaagtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GRMZM2G010085_T01 (Zea mays), 5'ss of exon 13
GATGAGAACAAGTTTGACTTCAAGAAAATTGTCAGTGAAAACTGGATTGAGCCACCAAAAAGAGAGCGGAAGCGGAAgtaattgtgaattttcagttgccaacttatgttataattttatgtttttcattatcatttaagacatgtttccattttcttgtcctttaagtag
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GATGAAAACAAGGTTGATTTCAAGAAACTTGTTAGTGATAACTGGATTGAGCCACCTAGAAGAGAAAGGAAGAGAAAgta--tgctcctcttctatttttaggccatggtactgtagtacttatttgaccttattttaactgtcatttgtag-------------------
upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA07G38050.2 (Glycine max), 5'ss of exon 16
GATGAGAACAAGTTTGACTTCAAGAAAATTGTCAGTGAAAACTGGATTGAGCCACCAAAAAGAGAGCGGAAGCGGAAgtaattgtgaattttcagttgccaacttatgttataattttatgtttttcattatcatttaagacatgtttccattttcttgtcctttaagtag--------------
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GATGAGAACAAATTTGATTTCAAAAAAATTGTGAGTGAAAATTGGGTCGAGCCACCAAGAAGAGAACGGAAGCGCAAgtaaacattggccttcattctgtatcttgagttat---tgaatttttttcactccgatgta-----tatttttgcttattgtttttttgggggggattctgactctag
upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA15G10370.1 (Glycine max), 5'ss of exon 16
GATGAGAACAAGTTTGACTTCAAGAAAATTGTCAGTGAAAACTGGATTGAGCCACCAAAAAGAGAGCGGAAGCGGAAgtaattgtgaattttca-gttgccaacttatgttataattttatgtttttcatt-atcatttaagacatgtttccattttcttgtcctttaagtag---
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GATGAAAGCAGATTTGATATAAAAAAAATTGTGAGTGAGAACTGGATTGAACCACCCAAAAGGGAGCGGAAGCGCAAgtaagcgttgccctttacattttatgcatccatattgatttggtattttgcttttatgacaagatgatggttttctttttctggggttcttgctcatag
upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA13G28720.1 (Glycine max), 5'ss of exon 16
GATGAGAACAAGTTTGACTTCAAGAAAATTGTCAGTGAAAACTGGATTGAGCCACCAAAAAGAGAGCGGAAGCGGAAgtaattgtgaattttcagttgcca-acttatgttataattttatgtttttcattatcatttaagacatg----tttccattttcttgtcctttaagtag---
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GATGAAAACAGATTTGATATAAAAAAAATTGTGAGCGAGAACTGGATTGAACCACCAAAAAGGGAGCGGAAACGCAAgtaagtgttgccctttaccttttatacattcatattgatttggtattttgttcttttgac-aagatgtgatgcttttctttttctggggttcttgctcatag
upper sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: AT5G18620.1 (Arabidopsis thaliana), 5'ss of exon 16
GATGAGAACAAGTTTGACTTCAAGAAAATTGTCAGTGAAAACTGGATTGAGCCACCAAAAAGAGAGCGGAAGCGGAAgtaattgtgaattttcagttgccaacttatgttataattttatgtttttcattatcatttaa----gacatgtttccattttcttgtcctttaagtag
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GATGAGAGCAAGGTGGATTTTAAAAAGATTGTGAGTGAAAATTGGAATGATCCACCAAAAAGAGAGAGAAAGCGCAAgtaaatattacttctactttttcattacgtggtcta-tcctgtcttcctaaacaatatctaacttcaaca-atttacttttctctacccaccctttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|28967912|gb|CB346945.1|CB346945EST: ATTGTCAGTGAAAACTGGATTGAGCCCCCAAAAAGAGAGCGGAAGCGGAA TTACTCAGAGTCTGAATACTTTAAGCAAACAATGCGGCAAGGTGCTCCAGC
genomic: ATTGTCAGTGAAAACTGGATTGAGCCACCAAAAAGAGAGCGGAAGCGGAAgtaattgtga ... ctttaagtagTTACTCAGAGTCTGAATACTTTAAGCAAACAATGCGGCAAGGTGCTCCAGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATGAGAACAAGTTTGACTTCAAGAAAATTGTCAGTGAAAACTGGATTGAGCCACCAAAAAGAGAGCGGAAGCGGAAgtaattgtgaattttcagttgccaacttatgttataattttatgtttttcattatcatttaagacatgtttccattttcttgtcctttaagtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA