1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GGCAACCAACATGATTGGACCTTCTGAATCAGCCGACGAGGATTTGCCCAGTGTTATGACTTGTGCCAATTACCTCAAGCTTCCTCCCTATTCCACCAAGgtaaaaaaattaatatatggtagatatgttgaaaataaaaatcagatacctaactgcatgctcacacatgctctatttaaatttacctttcccctttcctttcag
species | Vitis vinifera |
transcript | Vv04s0023g03830.t01 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: GTGTTATGACTTGTGCCAATTACCTCAAGCTTCCTCCCTATTCCACCAAG GATATTATGTATAAGAAACTACTTTATGCCATCAATGAAGGACAGGGATCTEST: gi|110702937|gb|EE079346.1|EE079346
genomic: GTGTTATGACTTGTGCCAATTACCTCAAGCTTCCTCCCTATTCCACCAAGgtaaaaaaat ... ttcctttcagGATATTATGTATAAGAAACTACTTTATGCCATCAATGAAGGACAGGGATCT
EST: TGTTATGACTTGTGCCAATTACCTCAAGCTTCCTCCCCTATTC-ACCAAG GATATTATGTATAAGAAACTACTTTATGCCATCAATGAAAGACAGGGATCTEST: gi|27580872|gb|CB003567.1|CB003567
genomic: TGTTATGACTTGTGCCAATTACCTCAAGCTTCCTCCC-TATTCCACCAAGgtaaaaaaat ... ttcctttcagGATATTATGTATAAGAAACTACTTTATGCCATCAATGAAGGACAGGGATCT
EST: GTGTTATGACTTGTGCCAATTACCTCAAGCTTCCTCCCTATTCCACCAAG GATATTATGTATAAGAAACTACTTTATGCCATCAATGAAGGACAGGGATCTEST: gi|71879127|gb|DT028182.1|DT028182
genomic: GTGTTATGACTTGTGCCAATTACCTCAAGCTTCCTCCCTATTCCACCAAGgtaaaaaaat ... ttcctttcagGATATTATGTATAAGAAACTACTTTATGCCATCAATGAAGGACAGGGATCT
EST: GTGTTATGACTTGTGCCAATTACCTCAAGCTTCCTCCCTATTCCACCAAG GATATTATGTATAAGAAACTACTTTATGCCATCAATGAAGGACAGGGATCTEST: gi|71880224|gb|DT029279.1|DT029279
genomic: GTGTTATGACTTGTGCCAATTACCTCAAGCTTCCTCCCTATTCCACCAAGgtaaaaaaat ... ttcctttcagGATATTATGTATAAGAAACTACTTTATGCCATCAATGAAGGACAGGGATCT
EST: GTGTTATGACTTGTGCCAATTACCTCAAGCTTCCTCCCTATTCCACCAAG GATATTATGTATAAGAAACTACTTTATGCCATCAATGAAGGACAGGGATCTEST: gi|71879128|gb|DT028183.1|DT028183
genomic: GTGTTATGACTTGTGCCAATTACCTCAAGCTTCCTCCCTATTCCACCAAGgtaaaaaaat ... ttcctttcagGATATTATGTATAAGAAACTACTTTATGCCATCAATGAAGGACAGGGATCT
EST: GTGTTATGACTTGTGCCAATTACCTCAAGCTTCCTCCCTATTCCACCAAG GATATTATGTATAAGAAACTACTTTATGCCATCAATGAAGGACAGGGATCTEST: gi|30321585|gb|CD004847.1|CD004847
genomic: GTGTTATGACTTGTGCCAATTACCTCAAGCTTCCTCCCTATTCCACCAAGgtaaaaaaat ... ttcctttcagGATATTATGTATAAGAAACTACTTTATGCCATCAATGAAGGACAGGGATCT
EST: ATGTTATGACTTGTGCCAATTACCTCAAGCTTCCTCCCTATTCCACCAAG GATATTATGTATAAGAAACTACTTTATGCCATCAATGAAGGACAGGGATCTEST: gi|110707439|gb|EE083851.1|EE083851
genomic: GTGTTATGACTTGTGCCAATTACCTCAAGCTTCCTCCCTATTCCACCAAGgtaaaaaaat ... ttcctttcagGATATTATGTATAAGAAACTACTTTATGCCATCAATGAAGGACAGGGATCT
EST: GTGTTATGACTTGTGCCAATTACCTCAAGCTTCCTCCCTATTCCACCAAG GATATTATGTATAAGAAACTACTTTATGCCATCAATGAAGGACAGGGATCTEST: gi|71879085|gb|DT028140.1|DT028140
genomic: GTGTTATGACTTGTGCCAATTACCTCAAGCTTCCTCCCTATTCCACCAAGgtaaaaaaat ... ttcctttcagGATATTATGTATAAGAAACTACTTTATGCCATCAATGAAGGACAGGGATCT
EST: GTGTTATGACTTGTGCCAATTACCTCAAGCTTCCTCCCTATTCCACCAAG GATATTATGTATAAGAAACTACTTTATGCCATCAATGAAGGACAGGGATCTEST: gi|71881001|gb|DT030056.1|DT030056
genomic: GTGTTATGACTTGTGCCAATTACCTCAAGCTTCCTCCCTATTCCACCAAGgtaaaaaaat ... ttcctttcagGATATTATGTATAAGAAACTACTTTATGCCATCAATGAAGGACAGGGATCT
EST: GTGTTATGACTTGTGCCAATTACCTCAAGCTTCCTCCCTATTCCACCAAG GATATTATGTATAAGAAACTACTTTATGCCATCAATGAAGGACAGGGATCTEST: gi|71878239|gb|DT027294.1|DT027294
genomic: GTGTTATGACTTGTGCCAATTACCTCAAGCTTCCTCCCTATTCCACCAAGgtaaaaaaat ... ttcctttcagGATATTATGTATAAGAAACTACTTTATGCCATCAATGAAGGACAGGGATCT
EST: GTGTTATGACTTGTGCCAATTACCTCAAGCTTCCTCCCTATTCCACCAAG GATATTATGTATAAGAAACTACTTTATGCCATCAATGAAGGACAGGGATCTEST: gi|71880566|gb|DT029621.1|DT029621
genomic: GTGTTATGACTTGTGCCAATTACCTCAAGCTTCCTCCCTATTCCACCAAGgtaaaaaaat ... ttcctttcagGATATTATGTATAAGAAACTACTTTATGCCATCAATGAAGGACAGGGATCT
EST: GTGTTATGACTTGTGCCAATTACCTCAAGCTTCCTCCCTATTCCACCAAG GATATTATGTATAAGAAACTACTTTATGCCATCAATGAAGGACAGGGATCT
genomic: GTGTTATGACTTGTGCCAATTACCTCAAGCTTCCTCCCTATTCCACCAAGgtaaaaaaat ... ttcctttcagGATATTATGTATAAGAAACTACTTTATGCCATCAATGAAGGACAGGGATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCAACCAACATGATTGGACCTTCTGAATCAGCCGACGAGGATTTGCCCAGTGTTATGACTTGTGCCAATTACCTCAAGCTTCCTCCCTATTCCACCAAGgtaaaaaaattaatatatggtagatatgttgaaaataaaaatcagatacctaactgcatgctcacacatgctctatttaaatttacctttcccctttcctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT