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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTTGTCATGGGCAGTCGCATATAATGTGGTCGCAGTCCCCATTGCTGCCGGGGTACTACTTCCCCGTTTTGATCTTGCCATGACGCCTTCCCTTGCAGgtgagtaaagacactgttagtatcccactatttcttggaatgacaaacaatcttcaatcgtctcttatatgatatttaaaaaagaaatgttccattttcttatggtataatatttggtttggtag

Basic information

species Vitis vinifera
transcript Vv04s0008g01960.t01
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g01960.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA04G05900.1 (Glycine max), 5'ss of exon 15
AATTTGTCATGGGCAGTCGCATATAATGTGGTCGCAGTCCCCATTGCTGCCGGGGTACTACTTCCCCGTTTTGATCTTGCCATGACGCCTTCCCTTGCAGgtgagtaaagacactgttagtatcccactatttcttggaatgacaaacaatcttcaatcgtct-cttatatgatatttaaaaaagaaatgttccattttct-tatggtataatatttggtttggtag
|||||||| |||||||||||||||||||| || ||  | ||||||||||| || ||  ||||||||| ||||||  | |||||||| || || ||| |||||||| |    || | |    |  ||| | | || |  | | | |   |  |  |||    ||  || |||| | |       |   |  ||  |||||||  ||                      
AATTTGTCTTGGGCAGTCGCATATAATGTCGTTGCCATTCCCATTGCTGCTGGTGTGTTACTTCCCCATTTTGACTTCGCCATGACACCATCACTTTCAGgtgagcat---cattat-gccactccattttctcatata-taatagtgaggcaacaagaccctatttttatgttgtacttgctatttaccttgtattttctgcat----------------------

upper sequence: Vv04s0008g01960.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA06G05890.1 (Glycine max), 5'ss of exon 16
AATTTGTCATGGGCAGTCGCATATAATGTGGTCGCAGTCCCCATTGCTGCCGGGGTACTACTTCCCCGTTTTGATCTTGCCATGACGCCTTCCCTTGCAGgtgagtaaagacactgttagtatcccactatttcttgg--aatgacaaacaatcttcaatcgtctcttatatgatatttaaaaaagaaatgttccattttct---tatggtat----aatatttggtttggtag-------------------------------
|||||||  ||||| |||||||||||||| || ||  | ||||||||||| || ||  ||||||||| ||||||  |||||||||| || || ||| |||||||  |    || | | |  |  ||| | | || |    |||    |   | |   |  |   | |||| |  || ||   ||   |   ||  |||||||   |||||| |    ||| | |   ||  |                                 
AATTTGTGTTGGGCGGTCGCATATAATGTTGTTGCCATTCCCATTGCTGCTGGTGTTTTACTTCCCCATTTTGACTTTGCCATGACACCGTCACTTTCAGgtgaacag---cattat-accactccattttctcatatataatattgaggcaacaagaccctatttttatgttgtacttgctaatttacc-ttgtattttctgcatatggtgttttgaatgtatatcttcttttctgtttgacacccttaatatttgaatcacag