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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGCTGCAGAAAAGTTAGCACCACACTTGGAAATTATTCTACAACACCTAATGTGTGCTTTTGGGAAGTACCAGgttgttttctggccctttcatgtgctagctcttcttaatatgatcatgatgagacatgatagtggttgattacatgttgaagctaacataatgtttgtatcattacaattacattttattcttattattccactggtccataaatttattccatgatttgactatatccag

Basic information

species Vitis vinifera
transcript Vv03s0038g02830.t01
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: LOC_Os04g59494.2 (Oryza sativa), 5'ss of exon 16
GAGGCTGCAGAAAAGTTAGCACCACACTTGGAAATTATTCTACAACACCTAATGTGTGCTTTTGGGAAGTACCAGgttgttttctggccctttcatgtgctagctcttcttaatatgatcatgatgagacatgatagtggttgatta----catgttgaagctaacataatgt-ttgtatcattacaattacattttattcttattattccactggtccataaatttattccatgatttgactatatccag
|||||||| ||| |||||| ||||||||||| ||||||| | || ||||| |||||||| | ||| || ||||||||| |||    |   ||| | ||  ||  | |   |   ||    |  |||  |    | |   | |   ||    |   ||     ||||   | || |||  |||| |  |                                                               
GAGGCTGCTGAAGAGTTAGTACCACACTTGGGAATTATTTTGCAGCACCTTATGTGTGCCTATGGAAAATACCAGgttcttt----gtaatttaaagtcataattttcaattgcattga-acaatgcaatccaacaagtgcttcctaaggcctcattagttttaactctacgtgttgcttcatgagcag--------------------------------------------------------------

upper sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA10G42960.1 (Glycine max), 5'ss of exon 16
GAGGCTGCAGAAAAGTTAGCACCACACTTGGAAATTATTCTACAACACCTAATGTGTGCTTTTGGGAAGTACCAGgttgttttctggccctttcatgtgctagctcttcttaatatgat-catgatgagacatgatagtggttgattacatgttgaagctaacataatgtttgtatcattacaattacattttattcttattattccactggtccataaatttattccatgatttgactatatccag
|||||||| ||| |||| ||||||| |||||||||||| ||| | |||||||||  ||| |||||||| || |||||  ||||||| || |   |  |  ||  |  | ||  | |  |  |  || |  |||| |  ||| |||   | | |||   |  | ||  || |    |  |||  ||||  | | || || |    ||      |  |    ||| ||| |   ||             
GAGGCTGCTGAAGAGTTGGCACCACGCTTGGAAATTATACTAAAGCACCTAATGACTGCATTTGGGAAATATCAGgtgattttctgaccttaatagttaatacatagtatttgtttattgtaaaataaatcatgtt--tggatgacctc-tattgttac-gatattgtgctacatttcttatcattatgtgt-atgctcagacatctttaattgtagtcttttgttctaaacttcag----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34550426|gb|CF518644.1|CF518644
EST:     ACTTGGAAATTATTCTACAACACCTAATGTGTGCTTTTGGGAAGTACCAG                         AGACGAAATCTCAGAATCGTATATGATGCTATTGCAACTTTAGCAGATGCT
genomic: ACTTGGAAATTATTCTACAACACCTAATGTGTGCTTTTGGGAAGTACCAGgttgttttct ... ctatatccagAGACGAAATCTCAGAATCGTATATGATGCTATTGCAACTTTAGCAGATGCT