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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGGGGCATTTGCCATTGCTCAAGCACTCAAGGCTAATGAAGATGTGGCAGTCACGTCTCTAAACCTTGCGAGCAACTTCCTCACAAAATTTGGACAAgtaaattccttttctgttttgtttttcctgtttgtagtgtatatagctatatataacaaactttaacttccatgcag

Basic information

species Vitis vinifera
transcript Vv01s0026g00610.t01
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0026g00610.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: LOC_Os06g13050.1 (Oryza sativa), 5'ss of exon 17
TGAAGGGGCATTTGCCATTGCTCAAGCACTCAAGGCTAATGAAGATGTGGCAGTCACGTCTCTAAACCTTGCGAGCAACTTCCTCACAAAATTTGGACAAgtaaattccttttctgttttgtttttcctgtttgtagtgtatatagctatatataacaaactttaact---tccatgcag
||| || ||||||||  | || |||||||| || |||||||||||| | |||||||| ||  |||| ||||| | ||||||| |||| ||||||||||| || | || |  | |   || | | ||| || | ||  | |    || ||| | | |   |   |   |   || ||||||
TGATGGAGCATTTGCATTGGCACAAGCACTTAAAGCTAATGAAGATCTTGCAGTCACATCATTAAATCTTGCAAACAACTTCTTCACTAAATTTGGACAGgtcagttgccgtaccagttggctattcatggt-gtcatttg---agttatgttttattcatgctggttgagtcaatgcag

upper sequence: Vv01s0026g00610.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA01G04270.1 (Glycine max), 5'ss of exon 13
TGAAGGGGCATTTGCCATTGCTCAAGCACTCAAGGCTAATGAAGATGTGGCAGTCACGTCTCTAAACCTTGCGAGCAACTTCCTCACAAAATTTGGACAAgtaaattccttttctgttttgtttttcctgtttgtagtgt-atatagctat-atataacaaactttaacttccatgcag
||| || || ||||| |||||||||||||||||| ||||||| ||||| || ||||| || |||||| |||| || |||||||| ||||||||||| || || |  |  |||    | ||| ||    |   | |  | | || | | | | ||  | |  | | ||  |  ||| |||
TGATGGAGCTTTTGCTATTGCTCAAGCACTCAAGTCTAATGATGATGTAGCTGTCACATCACTAAACATTGCCAGTAACTTCCTAACAAAATTTGGGCAGgtgatgtattttgtgctattgcttagtttacctctccttttattttgttttcatggatctgaatatacttcacattcag

upper sequence: Vv01s0026g00610.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA02G03410.1 (Glycine max), 5'ss of exon 15
TGAAGGGGCATTTGCCATTGCTCAAGCACTCAAGGCTAATGAAGATGTGGCAGTCACGTCTCTAAACCTTGCGAGCAACTTCCTCACAAAATTTGGACAAgtaaattccttttctgttttgtttttcctgtttgtagtgtatatagctatatataacaaactttaacttccatgcag---------------
||| || || ||||| |||||||||||||||||| ||||||| ||||| || ||||| || |||||| |||  || |||||||| ||||||||||| || || |  |  |||    | ||| | |  || ||  |    | ||   ||   | ||    | ||| |      || |                
TGATGGAGCTTTTGCTATTGCTCAAGCACTCAAGTCTAATGATGATGTAGCTGTCACATCCCTAAACATTGGCAGTAACTTCCTAACAAAATTTGGGCAGgtgatgtattttatgctattgctataacttttgcttagttttacctctccttttattttattttcatggatctgaatatacttcaaattcag

upper sequence: Vv01s0026g00610.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: AT1G10510.1 (Arabidopsis thaliana), 5'ss of exon 17
TGAAGGGGCATTTGCCATTGCTCAAGCACTCAAGGCTAATGAAGATGTGGCAGTCACGTCTCTAAACCTTGCGAGCAACTTCCTCACAAAATTTGGACAAgtaaattcctttt----ctgttttgtttttcctgtttgtagtgtatatagctatatataacaaactttaacttccatgcag
||| || ||||| ||||||||||||||| | ||||| |||||||||||  |||| || ||  ||||||||| || ||||||| |||| || |||||||| ||||    | | |    |  |   | |  ||   | | | |     | |    |    ||    | ||   |   || |||
TGATGGAGCATTCGCCATTGCTCAAGCATTGAAGGCCAATGAAGATGTCACAGTTACATCGATAAACCTTGGGAACAACTTCATCACCAAGTTTGGACAGgtaagaaacatatggtgcaatggagataatcaaatctttcgctcg-acattgctgagaaatttcccttttgtgttatccag