Sequence
atgc intronic sequence ATGC exonic sequenceCTTGCTTGGTAAGAAACAGTCAGGACATCTTCCAGAGTTTCCTATTGCTAGATTGGAGATTGATGGAAATATTCTGCAAGAAGCACATCTTGCTGCACTGgtaagtgtgatttctctggacccctttttgttgacatctgtggtggaattttaatttgctataatttatatcttacttccaataggacttaaatattatt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g04880.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: LOC_Os02g48100.1 (Oryza sativa), 5'ss of exon 6
CTTGCTTGGTAAGAAACAGTCAGGACATCTTCCAGAGTTTCCTATTGCTAGATTGGAGATTGATGGAAATATTCTGCAAGAAGCACATCTTGCTGCACTGgtaagtgtgatttctctggacccctttttgttgacatctgtggtggaa----ttttaatttgctataatttatatcttacttccaataggacttaaatattatt------------
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TCTACTCGGCAAGAAACAGTCAGGGCATCTTCCAGAGTTTCCAATAGCTAGACTGGAGATTGATGGCAGTATTCTACAAGAAGCTCATCTTGCTGCACTTgtaagttcatttgctaaaccccaattcgtgttgctattaatgatcagacaactcttctatcactgtagtatataacttatttgttcatgtttttaaaagtagcttttttgtggcag
upper sequence: Vv01s0011g04880.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GRMZM2G315176_T02 (Zea mays), 5'ss of exon 7
CTTGCTTGGTAAGAAACAGTCAGGACATCTTCCAGAGTTTCCTATTGCTAGATTGGAGATTGATGGAAATATTCTGCAAGAAGCACATCTTGCTGCACTGgtaagt-------gtgatttctctggacccctttttgttgacatctgtggtggaattttaatttgctataatttatatcttacttccaataggacttaaatattatt-
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TCTACTAGGTAAAAAGCAATCTGGTCATCTTCCAGAATTTCCAATAGCTAGATTGGAGGTCGATGGTGGTATTTTACAAGAGGCCCATCTTGCCGCTCTGgtaagttcttcccctgaattttctgaaagatatttcataaatgtgtttccatgtatattgagctgac-tgtcttgtaacattcttt-----ggggttatacaatgcag
upper sequence: Vv01s0011g04880.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA07G21670.1 (Glycine max), 5'ss of exon 2
CTTGCTTGGTAAGAAACAGTCAGGACATCTTCCAGAGTTTCCTATTGCTAGATTGGAGATTGATGGAAATATTCTGCAAGAAGCACATCTTGCTGCACTGgtaagtgtg-atttctctggacccctttttgttga--catctgt-----ggtggaattttaatttgctataatttatatcttac---ttccaatag-gacttaaatattatt-----------------------------------------------------------------------------------
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CTTGCTTGGAAAGAAACAATCTGGACATCTTCCTGAGTTTCCTGTTGCCAGATTGGAAGTTGATGGAAATATTTTACAAGATGCGCGCATTGCTGCACTGgtaattgtttaataacaccctctaatatttattgaattatctattaattgttaatatggtggtttgttacttttaatgttacagctgtccagatagtaaattagttattggctaaagtgcgtgtttcgttcaacttattttgttattctttacacttgattattttatgatacctaccttgaaaccctcccaaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|351033998|gb|FQ447915.1|FQ447915EST: GATTGGAGATTGATGGAAATATTCTGCAAGAAGCACATCTTGCTGCACTG AAAATTTTAGGCACTTCTCATGATTTGGAGCAATTCCCGGAGCTCAAAGCT
genomic: GATTGGAGATTGATGGAAATATTCTGCAAGAAGCACATCTTGCTGCACTGgtaagtgtga ... caatgtgcagAAAATTTTAGGCACTTCTCATGATTTGGAGCAATTCCCGGAGCTCAAAGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTGCTTGGTAAGAAACAGTCAGGACATCTTCCAGAGTTTCCTATTGCTAGATTGGAGATTGATGGAAATATTCTGCAAGAAGCACATCTTGCTGCACTGgtaagtgtgatttctctggacccctttttgttgacatctgtggtggaattttaatttgctataatttatatcttacttccaataggacttaaatattatt
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatagga