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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGATGACCCTCGTCTTATGACATTAGCTGGTTTACGACGTAGAGGGGTGACTTCGACCTCCATAAATGCTTTTGTTCGAGGAATTGGAATCACTAGAAGgttgacatattccttgtggtgtttattcagaagttcaaaaaatatcaaattttatcatgccacatgtgcttttgtcatagatattaatgctaccttttgccacag

Basic information

species Vitis vinifera
transcript Vv01s0011g03740.t01
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g03740.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA10G41920.2 (Glycine max), 5'ss of exon 16
GGGATGACCCTCGTCTTATGACATTAGCTGGTTTACGACGTAGAGGGGTGACTTCGACCTCCATAAATGCTTTTGTTCGAGGAATTGGAATCACTAGAAGgt-tgacat--attccttgtggtgtttattcagaagttcaaaaaatatcaaattttatcatgccacatgtgcttttgtcatagatattaatgctaccttttgccacag
||||||| |||||| | |||||| |||||||||| || ||||||||  ||||| | ||  | || ||||||||||| |||||||||||||| |||||||||| ||| ||  ||| ||        || || | |      |||||||  |  || ||   |     |||||     ||  | || |    |   || ||    || | 
GGGATGATCCTCGTTTGATGACACTAGCTGGTTTGCGGCGTAGAGGCATGACTCCAACTGCAATCAATGCTTTTGTACGAGGAATTGGAATAACTAGAAGgtatgatatgaatttctaactacagttgtttatat-----aaaaatactat-ttctaagttattg-atgtggaaaagtacttgaaacatctcacactttggttcata-

upper sequence: Vv01s0011g03740.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA20G25120.2 (Glycine max), 5'ss of exon 16
GGGATGACCCTCGTCTTATGACATTAGCTGGTTTACGACGTAGAGGGGTGACTTCGACCTCCATAAATGCTTTTGTTCGAGGAATTGGAATCACTAGAAGgt-tgacat--attccttgtggtgtttattcagaagttcaaaaaatatcaaattttatcatgcc-acatgtgcttttgtcatagatattaatgctaccttttgccacag
||||||| |||||| | |||||| |||||||||| || ||||||||  ||||  | ||  | || ||||||||||| |||||||||||||| |||||||||| ||| ||  ||| |          | ||   |     | |  || || || ||  | | |   | | || |||    |||      | |  ||    |||       
GGGATGATCCTCGTTTGATGACACTAGCTGGTTTGCGGCGTAGAGGCATGACCCCAACTGCAATCAATGCTTTTGTCCGAGGAATTGGAATAACTAGAAGgtatgatatcaatttccaactacagctgtttgtataaatatactatttctaagttattgacgtggaaaagtacttgaaacat-----ctcactcttttgtttata----