Sequence
atgc intronic sequence ATGC exonic sequenceATCTTTCTTTGGGGCAAAACCAGAAATGGTGATAAAAGGTGGTGTAATTGCATGGGCTAACATGGGTGATCCAAATGCTAGCATCCCTACACCTGAACCGgtaaattatttttattaatgaatttataacatactgagaagggaaaagaaagtggaaacaccctgtttacattgttcatgagcaaattgcaatttaatga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: 13114.m00152 (Oryza sativa), 5'ss of exon 5
ATCTTTCTTTGGGGCAAAACCAGAAATGGTGATAAAAGGTGGTGTAATTGCATGGGCTAACATGGGTGATCCAAATGCTAGCATCCCTACACCTGAACCGgta---aattatttttattaatgaatttataacatactgagaagggaaaagaaagtggaaacaccctgtttacattgttcatgagcaaattgcaatttaatga
||||||||||| ||||||||||||||||| ||||| ||||||| |||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||| || | || | |||| || | | | | ||| | || || | | ||| | || | ||| | | | |
TTCTTTCTTTGGAGCAAAACCAGAAATGGTTATAAAGGGTGGTGCTATTGCATGCGCTAATATGGGTGATCCAAATGCTAGCATTCCAACACCTGAACCGgtacggaacttcttcttgagatgagttgagttgaaatagttaagagcctgtttggtagagctccaacaccaaaatttagctacag-gagttg-ggtctgaag-
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GRMZM2G461569_T01 (Zea mays), 5'ss of exon 16
ATCTTTCTTTGGGGCAAAACCAGAAATGGTGATAAAAGGTGGTGTAATTGCATGGGCTAACATGGGTGATCCAAATGCTAGCATCCCTACACCTGAACCGgtaaattatttttattaatgaatttataacatactgagaagggaaaagaaagtggaaacaccctgtttacatt--gttcatg--agcaaattgcaatttaatga
||||||||| || || ||||||||| |||| |||| || |||| ||||||||||||||||||||||||||| ||||||||||| || ||||||||||| ||| | | | | |||| || ||| |||| | | | || ||||| |||| | ||| | | | |||||| | |
ATCTTTCTTCGGCGCTAAACCAGAACTGGTTGTAAAGGGAGGTGCAATTGCATGGGCTAACATGGGTGATCCCAATGCTAGCATTCCAACACCTGAACCTgtatgg-actcctttcaatggatactctgaatataaagaatttgtct---acttttaccatgatgtttccatttagcccatataaatagaagtcaatttcacta
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA05G27840.1 (Glycine max), 5'ss of exon 16
ATCTTTCTTTGGGGCAAAACCAGAAATGGTGATAAAAGGTGGTGTAATTGCATGGGCTAACATGGGTGATCCAAATGCTAGCATCCCTACACCTGAACCGgtaaattatttttat-taatgaatttataacatactgagaagggaaaagaaagtggaaacaccctgtttacattgttcatgagcaaattgcaatttaatga
|||||| |||||||||||||||||||||||||| |||||||| || ||||||||||| | |||||||| |||||||| |||||||| || |||||||||||||| | ||| ||| ||| | ||| | ||| | | | | | | | ||| | | || ||| | || ||
ATCTTTTTTTGGGGCAAAACCAGAAATGGTGATCAAAGGTGGGGTGGTTGCATGGGCTGATATGGGTGACCCAAATGCAAGCATCCCCACTCCTGAACCGgtaaagtttttgtatctaactagtttggcttgagtttttaagtagagtgcctcttgcatagtcttttttggtatttagattccttaat-gttgttctatat
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA11G37250.1 (Glycine max), 5'ss of exon 17
ATCTTTCTTTGGGGCAAAACCAGAAATGGTGATAAAAGGTGGTGTAATTGCATGGGCTAACATGGGTGATCCAAATGCTAGCATCCCTACACCTGAACCGgtaaattatttttattaatgaatttataacatactgagaagggaaaagaaagtg----gaaacaccctgtttacattgttcatgag--caaattgcaatttaatga--------------------------
|| || ||||| |||||||||||||||||||| |||||||||| |||||| |||||||||||||| |||||||| |||||||| |||||||||||||||| | || ||| || ||| | | || || | ||| | || ||| || | | | || || |||| | ||| |
GTCATTTTTTGGAGCAAAACCAGAAATGGTGATCAAAGGTGGTGAGGTTGCATATGCTAACATGGGTGACCCAAATGCAAGCATCCCAACACCTGAACCGgtaatgttttcatatgcattgggatatgatccagtgccaactggtgccaaacttttttaaatcacactttcaataacttttatccatctaaatagaaatgcttcaactaaactaggaaactcaatcttgtag
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: AT1G67550.1 (Arabidopsis thaliana), 5'ss of exon 16
ATCTTTCTTTGGGGCAAAACCAGAAATGGTGATAAAAGGTGGTGTAATTGCATGGGCTAACATGGGTGATCCAAATGCTAGCATCCCTACACCTGAACCGgtaaattatttttattaatgaatttataacatactgagaagggaa-aagaaagtggaaacaccctgtttacattgttcatgagcaaattgcaatttaatga
||||||| || ||||||||||||||| | || ||||| || || ||||||||||| ||||| ||| ||||||| ||||| || || ||||| ||||||| | | | || | ||| || | | || | | | | || | || | || |||| |
GGCTTTCTTCGGAGCAAAACCAGAAATGATAATCAAAGGAGGCAATATAGCATGGGCTAATATGGGCGATGCAAATGCGAGCATACCCACTCCTGAGCCGgtaatcattactgactactagattctagactcgttttcttgacaacacgtctctaaagacggtcctttcttttattttatgatggtag-------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122688779|gb|EC925600.1|EC925600EST: CATGGGCTAACATGGGTGATCCAAATGCTAGCATCCCTACACCTGAACCG GTGATGATGAGACCCATGTTTGGAGCATTTGGCAAGGCTGGAAGTGCCAAC
genomic: CATGGGCTAACATGGGTGATCCAAATGCTAGCATCCCTACACCTGAACCGgtaaattatt ... tctgatgcagGTGATGATGAGACCCATGTTTGGAGCATTTGGCAAGGCTGGAAGTGCCAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCTTTCTTTGGGGCAAAACCAGAAATGGTGATAAAAGGTGGTGTAATTGCATGGGCTAACATGGGTGATCCAAATGCTAGCATCCCTACACCTGAACCGgtaaattatttttattaatgaatttataacatactgagaagggaaaagaaagtggaaacaccctgtttacattgttcatgagcaaattgcaatttaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgagaagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagcaaa