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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTGAGCTTTTGCTTTGGCTTTTGGATGAAAGGGTTCCTCATATGGATGATGGCAGCCAACTTCTGAAAGCTCTGAATGTTTTGATGCTTAAGATCCTGgttaagttctacttcaacatgtataaatttgttgtattttcatagtatctgttctctcgccattctgactagtggcttacaaatgcag

Basic information

species Vitis vinifera
transcript Vv00s0652g00030.t01
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0652g00030.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: LOC_Os01g60040.2 (Oryza sativa), 5'ss of exon 44
CACTGAGCTTTTGCTTTGGCTTTTGGATGAAAGGGTTCCTCATATGGATGATGGCAGCCAACTTCTGAAAGCTCTGAATGTTTTGATGCTTAAGATCCTGgttaagttctacttcaacatgtataaatttgttgtattttcatagtatctgttctctcgccattctgactagtggcttacaaatgcag
||| |||||  | |||||||| || |||||||||||||||| |||||||||||| || || || || |||||||| ||||| ||||||||||| ||| |||||    ||| | |   ||||   |  || ||||    ||  |  | |||  |        | |  ||  ||                
CACAGAGCTACTACTTTGGCTCTTAGATGAAAGGGTTCCTCTTATGGATGATGGAAGTCAGCTACTCAAAGCTCTAAATGTCTTGATGCTTAAAATCTTGgtttgtatcttcattttcatgctcagtttagttgctacttgttcttttctaatggtca--tacttggagcag----------------

upper sequence: Vv00s0652g00030.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GRMZM2G068755_T01 (Zea mays), 5'ss of exon 45
CACTGAGCTTTTGCTTTGGCTTTTGGATGAAAGGGTTCCTCATATGGATGATGGCAGCCAACTTCTGAAAGCTCTGAATGTTTTGATGCTTAAGATCCTGgt-taagttctacttcaacatgtataaatttgttgtattttcatagtatctgttctctcgccattctgactagtggcttacaaatgcag
 || ||| |  | ||||||||||| |||||||||||||||| ||||||||||||||||||| | || ||||| || ||||||||||||||||| ||| |||| |      | |||   ||||      |||| | ||  |   |  | ||| |  |    |  || | |  ||                
TACGGAGTTACTTCTTTGGCTTTTAGATGAAAGGGTTCCTCTTATGGATGATGGCAGCCAATTACTCAAAGCACTAAATGTTTTGATGCTTAAAATCTTGgtatgtaaatttctttttcatgctcttgtttgctctacct--gtgctttctttaatggttctgttttaaacag----------------

upper sequence: Vv00s0652g00030.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GRMZM2G009849_T02 (Zea mays), 5'ss of exon 27
CACTGAGCTTTTGCTTTGGCTTTTGGATGAAAGGGTTCCTCATATGGATGATGGCAGCCAACTTCTGAAAGCTCTGAATGTTTTGATGCTTAAGATCCTGgt-taagttctacttcaacatgtataaatttgttgtattttcatagtatctgttctctcgccattctgactagtggcttacaaatgcag
 || ||| |  | |||||||| || |||||||||||||||| ||||||||||||||||||| | || ||||| || ||||||||||||||||| |||||||| |      | |||   ||||  |   |||| | || ||   |  | ||| |  |    |  || | |  ||                
TACGGAGTTACTTCTTTGGCTCTTAGATGAAAGGGTTCCTCTTATGGATGATGGCAGCCAATTACTCAAAGCACTAAATGTTTTGATGCTTAAAATCCTGgtatccaaatttctttttcatgc-tccctttgctctagtt--gtgctttctttaatggttctgttttaaacag----------------