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TTCAGGAGGAAAAGTGAAAGGACAAGGAACTGGGATAGTCCTTATTGTAACTTTGATTGATGTGGAAGCTGAATCCAGTATAAATGCTGCAATGTTGAAGgtttgaaaccctcttttaactctatttttttgttaagctagaatcacacttccttttgtgccatcaccattgtccacctagtgttggttatctctcttcc...
species | Vitis vinifera |
transcript | Vv00s0283g00020.t01 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: CTTTGATTGATGTGGAAGCTGAATCCAGTATAAATGCTGCAATGTTGAAG GAAGGGCTTGCTACTGTAGAGAAAAGAAAGAGATGGGACCCCAAGGAAAAAEST: gi|30253044|gb|CB970595.1|CB970595
genomic: CTTTGATTGATGTGGAAGCTGAATCCAGTATAAATGCTGCAATGTTGAAGgtttgaaacc ... aatttttcagGAAGGGCTTGCTACTGTAGAGAAAAGAAAGAGATGGGACCCCAAGGAAAAA
EST: CTTTGATTGATGTGGAAGCTGAATCCAGTATAAATGCTGCAATGTTGAAG GAAGGGCTTGCTACTGTAGAGAAAAGAAAGAGATGGGACCCCAAGGAAAAAEST: gi|30135435|gb|CB920773.1|CB920773
genomic: CTTTGATTGATGTGGAAGCTGAATCCAGTATAAATGCTGCAATGTTGAAGgtttgaaacc ... aatttttcagGAAGGGCTTGCTACTGTAGAGAAAAGAAAGAGATGGGACCCCAAGGAAAAA
EST: CTTTGATTGATGTGGAAGCTGAATCCAGTATAAATGCTGCAATGTTGAAG GAAGGGCTTGCTACTGTAGAGAAAAGAAAGAGATGGGACCCCAAGGAAAAAEST: gi|71869579|gb|DT018634.1|DT018634
genomic: CTTTGATTGATGTGGAAGCTGAATCCAGTATAAATGCTGCAATGTTGAAGgtttgaaacc ... aatttttcagGAAGGGCTTGCTACTGTAGAGAAAAGAAAGAGATGGGACCCCAAGGAAAAA
EST: CTTTGATTGATGTGGAAGCTGAATCCAGTATAAATGCTGCAATGTTGAAG GAAGGGCTTGCTACTGTAGAGAAAAGAAAGAGATGGGACCCCAAGGAAAAAEST: gi|254914692|gb|GR906793.1|GR906793
genomic: CTTTGATTGATGTGGAAGCTGAATCCAGTATAAATGCTGCAATGTTGAAGgtttgaaacc ... aatttttcagGAAGGGCTTGCTACTGTAGAGAAAAGAAAGAGATGGGACCCCAAGGAAAAA
EST: CTTTGATTGATGTGGAAGCTGAATCCAGTATAAATGCTGCAATGTTGAAG GAAGGGCTTGCTACTGTEST: gi|71869623|gb|DT018678.1|DT018678
genomic: CTTTGATTGATGTGGAAGCTGAATCCAGTATAAATGCTGCAATGTTGAAGgtttgaaacc ... aatttttcagGAAGGGCTTGCTACTGT
EST: CTTTGATTGATGTGGAAGCTGAATCCAGTATAAATGCTGCAATGTTGAAG GAAGGGCTTGCTACTGTAGAGAAAAGAAAGAGATGGGACCCCAAGGAAAAAEST: gi|110715593|gb|EE093818.1|EE093818
genomic: CTTTGATTGATGTGGAAGCTGAATCCAGTATAAATGCTGCAATGTTGAAGgtttgaaacc ... aatttttcagGAAGGGCTTGCTACTGTAGAGAAAAGAAAGAGATGGGACCCCAAGGAAAAA
EST: CTTTGATTGATGTGGAAGCTGAATCCAGTATAAATGCTGCAATGTTGAAG GAAGGGCTTGCTACTGTAGAGAAAAGAAAGAGATGGGACCCCAAGGAAAAAEST: gi|71872847|gb|DT021902.1|DT021902
genomic: CTTTGATTGATGTGGAAGCTGAATCCAGTATAAATGCTGCAATGTTGAAGgtttgaaacc ... aatttttcagGAAGGGCTTGCTACTGTAGAGAAAAGAAAGAGATGGGACCCCAAGGAAAAA
EST: CTTTGATTGATGTGGAAGCTGAATCCAGTATAAATGCTGCAATGTTGAAG GAAGGGCTTGCTACTGTAGAGAAAAGAAAGAGATGGGACCCCAAGGAAAAA
genomic: CTTTGATTGATGTGGAAGCTGAATCCAGTATAAATGCTGCAATGTTGAAGgtttgaaacc ... aatttttcagGAAGGGCTTGCTACTGTAGAGAAAAGAAAGAGATGGGACCCCAAGGAAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCAGGAGGAAAAGTGAAAGGACAAGGAACTGGGATAGTCCTTATTGTAACTTTGATTGATGTGGAAGCTGAATCCAGTATAAATGCTGCAATGTTGAAGgtttgaaaccctcttttaactctatttttttgttaagctagaatcacacttccttttgtgccatcaccattgtccacctagtgttggttatctctcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctcttc