Sequence
atgc intronic sequence ATGC exonic sequenceGTGATAATGTAATTGTTGGGAGCAGAGAGGGAAAGTTGTGTTGGTTTGACATGGACCTTTCATCTCAACCTTACAGGATTCTCAAgtatgtcatgcttctttttgcagaaagggaaagaataaacaaaaagaagtttttgttttgttttcttttgtttctctttaacgttgtgtggcttttcaaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0227g00060.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA12G28910.1 (Glycine max), 5'ss of exon 17
GTGATAATGTAATTGTTGGGAGCAGAGAGGGAAAGTTGTGTTGGTTTGACATGGACCTTTCATCTCAACCTTACAGGATTCTCAAgtatgtcatgcttctttttgcagaaagggaaagaataaacaaaaagaagtttttgttttgttttcttttgtttctctttaacgttgtgtggcttttcaaa
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GTGATAATTTAATTGTCGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACATGGACCTTTCATCTAAACCGTATAAAATTCTTAAgtaagtcttagtatttatctgctaattgaaagcaatgtcaaactcgttacattcttttgtgtcagagtgggttctctgctcactaatgcagattatacta
upper sequence: Vv00s0227g00060.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA16G00540.1 (Glycine max), 5'ss of exon 10
GTGATAATGTAATTGTTGGGAGCAGAGAGGGAAAGTTGTGTTGGTTTGACATGGACCTTTCATCTCAACCTTACAGGATTCTCAAgtatgtcatgcttctttttgcagaaagggaaagaataaacaaaaagaagtttttgttttgttttcttttgtttctct-ttaacgttgtgtggcttttcaaa
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GTGATAATTTAATTGTGGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACATGGACCTTTCATCTAAACCATATAAAATTCTTAAgtaagtctttctattttatctgctaattgaaagcaatgtcaaactcgttacattcttttctgtcagagtggttctctgcttatattatacagtatgggct-
upper sequence: Vv00s0227g00060.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA16G00540.2 (Glycine max), 5'ss of exon 10
GTGATAATGTAATTGTTGGGAGCAGAGAGGGAAAGTTGTGTTGGTTTGACATGGACCTTTCATCTCAACCTTACAGGATTCTCAAgtatgtcatgcttctttttgcagaaagggaaagaataaacaaaaagaagtttttgttttgttttcttttgtttctct-ttaacgttgtgtggcttttcaaa---
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GTGATAATTTAATTGTGGGTAGCAAAGAGGGGAAGATGTGTTGGTTTGACATGGACCTTTCATCTAAACCATATAAAATTCTTAAgtaagtctttctattttatctgctaattgaaagcaatgtcaaactcgttacattcttttctgtcagagtggttctctgcttatattatacagtatgggctacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110361964|gb|EC925470.1|EC925470EST: TTGTGTTGGTTTGACATGGACCTTTCATCTCAACCTTACAGGATTCTCAA GTGTCACCCTAAAGACATTACCAATGTGGCTTTCCATCATTCATACCCTCT
genomic: TTGTGTTGGTTTGACATGGACCTTTCATCTCAACCTTACAGGATTCTCAAgtatgtcatg ... aaattctcagGTGTCACCCTAAAGACATTACCAATGTGGCTTTCCATCATTCATACCCTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGATAATGTAATTGTTGGGAGCAGAGAGGGAAAGTTGTGTTGGTTTGACATGGACCTTTCATCTCAACCTTACAGGATTCTCAAgtatgtcatgcttctttttgcagaaagggaaagaataaacaaaaagaagtttttgttttgttttcttttgtttctctttaacgttgtgtggcttttcaaa
- - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagaa