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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCATATATGATGTTGATCAGAGGGTTTCCAAAGGAACACAAGTGATCCCTCCACTTCCTGAGGACAGGTTTCTATGCAGTTTCAGCCATATATTTGCAGgtttgccttttctgttaattttgctaaatacagcagtttttccttgtgaatttatctcttattgcttcttgtgaatatcag

Basic information

species Vitis vinifera
transcript Vv00s0211g00060.t01
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0211g00060.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA01G02480.1 (Glycine max), 5'ss of exon 13
ACCATATATGATGTTGATCAGAGGGTTTCCAAAGGAACACAAGTGATCCCTCCACTTCCTGAGGACAGGTTTCTATGCAGTTTCAGCCATATATTTGCAGgtttgcc---ttttctgttaattttgctaaatacagcagtttttccttg----tgaatttatctcttattgcttcttgtgaatatcag
 | || ||||||||||| || || |||||  |   ||| |||||||| |||||| | || ||||| ||||| || ||||| || ||||||||||||||||||||||      |  ||||  | ||  ||| ||    ||| | ||        | ||||||| | || | | || |||    | | ||
TCGATCTATGATGTTGACCACAGAGTTTCTGAGAAAACCCAAGTGATTCCTCCATTACCAGAGGATAGGTTCCTTTGCAGCTTTAGCCATATATTTGCAGgtttgctgtgcctcttgtttctctttgtaattatgctagtgtctcaacaaaactaaatttatttattctgggtt-ttgcatttgttag

upper sequence: Vv00s0211g00060.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA09G33490.1 (Glycine max), 5'ss of exon 13
ACCATATATGATGTTGATCAGAGGGTTTCCAAAGGAACACAAGTGATCCCTCCACTTCCTGAGGACAGGTTTCTATGCAGTTTCAGCCATATATTTGCAGgtttgcc---ttttctgttaattttgctaaatacagcagtttttccttg----tgaatttatctcttattgcttcttgtgaatatcag
 | || ||||||||||| |  || |||||  |   ||| |||||||| |||||| | || ||||| ||||| || ||||| || |||||||||||||||||||||       |  ||||  | ||  ||| ||    ||| | ||        | ||||||| | || | | || |||    | | ||
TCAATCTATGATGTTGACCGCAGAGTTTCTGAGAAAACCCAAGTGATTCCTCCATTACCAGAGGATAGGTTCCTTTGCAGCTTTAGCCATATATTTGCAGgtttgatgtgcctcttgtttctctttgtaattatgctagtgtctcaacaaaactaaatttatttattctgggtt-ttgcttttgttag

upper sequence: Vv00s0211g00060.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: AT5G10540.1 (Arabidopsis thaliana), 5'ss of exon 13
ACCATATATGATGTTGATCAGAGGGTTTCCAAAGGAACACAAGTGATCCCTCCACTTCCTGAGGACAGGTTTCTATGCAGTTTCAGCCATATATTTGCAGgtttgccttttctgttaattttgcta-aatacagcagtttttccttgtga-atttatctcttattgcttcttgtgaatatcag--------------------------------
||||| || || |||||||| ||||| |||| |  ||||||||||||||||||||||||||| || || || || || || ||||| |||||||||||||||       ||       ||||| |  ||  || | ||      | || |  |  |  | |  | | | | | |||   |  |                                
ACCATCTACGAAGTTGATCAAAGGGTGTCCATAAAAACACAAGTGATCCCTCCACTTCCTGAAGATAGATTCCTCTGTAGCTTCAGTCATATATTTGCAGgtaacatccttaaacccgttttgttgtaacgcatccgtaaacgttagtcatgtgcagttatcgtaggtgcgtttgatagtttgtttcacttgttcaccttctcatgtcttgtcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110375519|gb|EC940512.1|EC940512
EST:     TCCACTTCCTGAGGACAGGTTTCTATGCAGTTTCAGCCATATATTTGCAG                         GTGGATACGCAGCTGGATACTATAGTTACAAG
genomic: TCCACTTCCTGAGGACAGGTTTCTATGCAGTTTCAGCCATATATTTGCAGgtttgccttt ... tgaatatcagGTGGATACGCAGCTGGATACTATAGTTACAAG
EST: gi|26263230|gb|CA814293.1|CA814293
EST:     TCCACTTCCTGAGGACAGGTTTCTATGCAGTTTCAGCCATATATTTGCAG                         GTGGATACGCAGCTGGATACTATAGTTACAAG
genomic: TCCACTTCCTGAGGACAGGTTTCTATGCAGTTTCAGCCATATATTTGCAGgtttgccttt ... tgaatatcagGTGGATACGCAGCTGGATACTATAGTTACAAG
EST: gi|34319398|gb|CF372152.1|CF372152
EST:     TCCACTTCCTGAGGACAGGTTTCTATGCAGTTTCAGCCATATATTTGCAG                         GTGGATACGCAGCTGGATACTATAGTTACAAG
genomic: TCCACTTCCTGAGGACAGGTTTCTATGCAGTTTCAGCCATATATTTGCAGgtttgccttt ... tgaatatcagGTGGATACGCAGCTGGATACTATAGTTACAAG
EST: gi|34543594|gb|CF511826.1|CF511826
EST:     TCCACTTCCTGAGGACAGGTTTCTATGCAGTTTCAGCCATATATTTGCAG                         GTGGATACGCAGCTGGATACTATAGTTACAAG
genomic: TCCACTTCCTGAGGACAGGTTTCTATGCAGTTTCAGCCATATATTTGCAGgtttgccttt ... tgaatatcagGTGGATACGCAGCTGGATACTATAGTTACAAG
EST: gi|33408872|gb|CF214499.1|CF214499
EST:     TCCACTTCCTGAGGACGGGTTTCTATGCAGTTTCAGCCATATATTTGCAG                         GTGGATACGCAGCTGGATACTATAGTTACAAG
genomic: TCCACTTCCTGAGGACAGGTTTCTATGCAGTTTCAGCCATATATTTGCAGgtttgccttt ... tgaatatcagGTGGATACGCAGCTGGATACTATAGTTACAAG
EST: gi|71887581|gb|DT036636.1|DT036636
EST:     TCCACTTCCTGAGGACAGGTTTCTATGCAGTTTCAGCCATATATTTGCAG                         GTGGATACGCAGCTGGATACTATAGTTACAAG
genomic: TCCACTTCCTGAGGACAGGTTTCTATGCAGTTTCAGCCATATATTTGCAGgtttgccttt ... tgaatatcagGTGGATACGCAGCTGGATACTATAGTTACAAG
EST: gi|77587212|gb|DV222739.1|DV222739
EST:     TCCACTTCCTGAGGACAGGTTTCTATGCAGTTTCAGCCATATATTTGCAG                         GTGGATACGCAGCTGGATACTATAGTTACAAG
genomic: TCCACTTCCTGAGGACAGGTTTCTATGCAGTTTCAGCCATATATTTGCAGgtttgccttt ... tgaatatcagGTGGATACGCAGCTGGATACTATAGTTACAAG
EST: gi|110386136|gb|EC950712.1|EC950712
EST:     TCCACTTCCTGAGGACAGGTTTCTATGCAGTTTCAGCCATATATTTGCAG                         GTGGATACGCAGCTGGATACTATAGTTACAAG
genomic: TCCACTTCCTGAGGACAGGTTTCTATGCAGTTTCAGCCATATATTTGCAGgtttgccttt ... tgaatatcagGTGGATACGCAGCTGGATACTATAGTTACAAG
EST: gi|33408956|gb|CF214583.1|CF214583
EST:     TCCACTTCCTGAGGACGGGTTTCTATGCAGTTTCAGCCATATATTTGCAG                         GTGGATACGCAGCTGGATACTATAGTTACAAG
genomic: TCCACTTCCTGAGGACAGGTTTCTATGCAGTTTCAGCCATATATTTGCAGgtttgccttt ... tgaatatcagGTGGATACGCAGCTGGATACTATAGTTACAAG