Sequence
atgc intronic sequence ATGC exonic sequenceCTACATCATCAGCCATCTAAAGAAGGAGATGCCTACTATGATGGGCAAAGCCAAGACTCAGCAGAGGCTTATCGACAATCTGGAAGATGAATTTGCAAAGgttccacatctctctcctgcaaataaccttgtaaaccaacacattcaattcaccattcatacattaatcgtactcattcttggttaatatatatatacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0090g01130.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GRMZM2G065012_T02 (Zea mays), 5'ss of exon 15
CTACATCATCAGCCATCTAAAGAAGGAGATGCCTACTATGATGGGCAAAGCCAAGACTCAGCAGAGGCTTATCGACAATCTGGAAGATGAATTTGCAAAGgttccacatctctctcctgcaaataaccttgtaa-accaacacattcaattcaccattcatacattaatcgtactcattcttggttaatatatatatacag--------------------------------------
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GCACATAATCAGCCATCTGAAGAAAGAGATGCCTGCACTGATGGGCAAGGCCAAGGCTCAGCAGAAGCTGCTCGACGGGCTGGATCAACAGTTCGCCAAGgttcactgctcatcccttgcaagttgcacactggcacctataggtgtagtgtag-gtgtaggcgtgtagcccacatgcatgcaatgcacgttcgtgttcttgtctctgaatccgagctgcatgcccttgctctgtgcag
upper sequence: Vv19s0090g01130.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA02G46350.1 (Glycine max), 5'ss of exon 15
CTACATCATCAGCCATCTAAAGAAGGAGATGCCTACTATGATGGGCAAAGCCAAGACTCAGCAGAGGCTTATCGACAATCTGGAAGATGAATTTGCAAAGgttccacatctctctcctgcaaataaccttgtaaaccaacacattcaattcaccattcatacattaatcgtactcattcttggttaatatatatatacag
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TTACATTATCAGCCATCTTAAAAAGGAGATGCCTGCTATGATAGGCAAAGCTAAAGCTCAACAAAAGCTCATCGATAATTTGGCAGCTGAATTTGGAAAGgtatga-atctttgtacatccgttttgcttatttgcttgt---ctctggcaagtgacaacacttaaaatgtataca--catgactga-attttgaaacag
upper sequence: Vv19s0090g01130.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: AT3G20290.2 (Arabidopsis thaliana), 5'ss of exon 15
CTACATCATCAGCCATCTAAAGAAGGAGATGCCTACTATGATGGGCAAAGCCAAGACTCAGCAGAGGCTTATCGACAATCTGGAAGATGAATTTGCAAAGgttccacatctctct---cctgcaaataaccttg-taaaccaacac--attcaattcaccattcatacattaatcgtactcattcttggttaatatatatatacag
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GTACATCATCAGCCATTTGAAGAAGGAGATGCCAGCGATAATGGGGAAAGCCAAAGCTCAACAGAAACTGATAGATAACTTGGAAGACGAGTTTGGAAAGgttggtaattggtttgattctgcggatcttttcaatacgccggttctgattccgatcatatttcatgctaatatgtgtttcaatgttgtgggggacatgaaaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110413941|gb|EC979760.1|EC979760EST: CCAAGACTCAGCAGAGGCTTATTGACAATCTGGAAGATGAATTTGCAAAG GTCCAGAGGGAGTTCCATCTGCCGGCGGGGGATTTCCCGAACGTCGACCAT
genomic: CCAAGACTCAGCAGAGGCTTATCGACAATCTGGAAGATGAATTTGCAAAGgttccacatc ... atatatacagGTCCAGAGGGAGTTCCATCTGCCGGCAGGGGATTTCCCGAACGTTGACCAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTACATCATCAGCCATCTAAAGAAGGAGATGCCTACTATGATGGGCAAAGCCAAGACTCAGCAGAGGCTTATCGACAATCTGGAAGATGAATTTGCAAAGgttccacatctctctcctgcaaataaccttgtaaaccaacacattcaattcaccattcatacattaatcgtactcattcttggttaatatatatatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG