Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttctcatctgtatcattgcgaaatgttaatttttctatttagagtatgttacttaaaaaaattgttagcattgtacacctttatttttatgat...

Basic information

species Vitis vinifera
transcript Vv19s0085g00880.t01
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349825250|gb|FQ417971.1|FQ417971
EST:     GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG                         GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGGATGACCTTC
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: gi|27586388|gb|CB009083.1|CB009083
EST:     GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG                         GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: gi|351040417|gb|FQ434550.1|FQ434550
EST:     GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG                         GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: gi|110688026|gb|EE066106.1|EE066106
EST:     GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG                         GGAACAAAAGTCCTTCTTGGGGGTAAAAGA-ACAGTCTGGGAATGACCTTC
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: gi|351042224|gb|FQ442691.1|FQ442691
EST:     GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG                         GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: gi|30302041|gb|CB978835.1|CB978835
EST:     GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG                         GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: gi|351028680|gb|FQ446353.1|FQ446353
EST:     GTTGAATCATTTGTTAAAGATGCTGTCTCAAAA                         GGAACAAAAGTCCTTCTTGGGGGTAAAAGACA
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACA
EST: gi|30128391|gb|CB913730.1|CB913730
EST:     GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG                         GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: gi|29785203|gb|CB341997.2|CB341997
EST:     GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG                         GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: gi|110712816|gb|EE088195.1|EE088195
EST:     GTTGAATCATTTGTTAA-GATGCTGTCTCAAAG                         GGAGCAAAA-TCCTTCTTGGGGGTAAA-GAAACAGTCCGGGAATGACCT-C
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: gi|77586300|gb|DV222253.1|DV222253
EST:     GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG                         GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: gi|351018416|gb|FQ439228.1|FQ439228
EST:     GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG                         GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: gi|349820783|gb|FQ404157.1|FQ404157
EST:     GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG                         GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: gi|34543124|gb|CF511356.1|CF511356
EST:     GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG                         GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: gi|110363491|gb|EC927084.1|EC927084
EST:     GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG                         GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: gi|110393201|gb|EC958271.1|EC958271
EST:     GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG                         GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: gi|110418290|gb|EC984428.1|EC984428
EST:     GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG                         GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: gi|110728458|gb|EE104042.1|EE104042
EST:     GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG                         GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: gi|34543207|gb|CF511439.1|CF511439
EST:     GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG                         GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: gi|29785173|gb|CB341929.2|CB341929
EST:     GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG                         GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: gi|161716149|gb|FC069492.1|FC069492
EST:     GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG                         GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: gi|33407050|gb|CF212677.1|CF212677
EST:     GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG                         GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: gi|30134739|gb|CB920077.1|CB920077
EST:     GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG                         GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: gi|351029837|gb|FQ427677.1|FQ427677
EST:     GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG                         GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: gi|110693458|gb|EE069709.1|EE069709
EST:     GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG                         GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: gi|29781739|gb|CB346445.2|CB346445
EST:     GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG                         GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACCCAGTTTGGGAATGACCTTC
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: gi|27586231|gb|CB008926.1|CB008926
EST:     GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG                         GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: gi|30251721|gb|CB969454.1|CB969454
EST:     GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG                         GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: gi|37190549|gb|CF609898.1|CF609898
EST:     GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG                         GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: gi|351040173|gb|FQ425259.1|FQ425259
EST:     GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG                         GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: gi|110688619|gb|EE067379.1|EE067379
EST:     GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG                         GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: gi|351033667|gb|FQ462197.1|FQ462197
EST:     GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG                         GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttctcatctgtatcattgcgaaatgttaatttttctatttagagtatgttacttaaaaaaattgttagcattgtacacctttatttttatgat

- - - - - - - - AAGATG
- - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa