Sequence
atgc intronic sequence ATGC exonic sequenceTGAAAACATGATTGCCCATAAGGATGATATCTACTCACGCCCTAAAAGAACCTGGTTTGCAACAGAAAAGGAGAAGAAGTCTGTGGCAAAGGCAGCAAAGgtaatttcatattgcaccattgttgtttatttgtattcatttgtaagtctatatataatgttgtatatgttttgtctgtgagttggcatttccatattct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0001g14540.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: LOC_Os12g29660.1 (Oryza sativa), 5'ss of exon 15
TGAAAACATGATTGCCCATAAGGATGATATCTACTCACGCCCTAAAAGAACCTGGTTTGCAACAGAAAAGGAGAAGAAGTCTGTGGCAAAGGCAGCAAAGgtaatttcatattgcaccat-tgt-tgtttatttg-tattcatttgt-aagtctatatataatgttgtatatgttttgtc-tgtgagttggcatttccatattct
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AGAAAATATGATAGCTCATAAGGATGAGATATACTCAAGACCAAAGAGAACCTGGTTTGCTACTGAGAAGGAAAAGAAACTTTTGGCAAAGGCTGCTAAAgtaagttcgccttaaattgtatatatatttctttgatgccaaattgccaattacatatgcaa-attctagctctcaaattgtgcctgctgcctgctgcatg----
upper sequence: Vv18s0001g14540.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GRMZM2G420865_T01 (Zea mays), 5'ss of exon 15
TGAAAACATGATTGCCCATAAGGATGATATCTACTCACGCCCTAAAAGAACCTGGTTTGCAACAGAAAAGGAGAAGAAGTCTGTGGCAAAGGCAGCAAAGgtaatttcatattgcaccattgt-tgtttatttgtattcatttgtaagtctatatataatgttgtatatgttttgtctgtgagttggcatttccatattct
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AGAAAATATGATAGCTCATAAGGATGAGATATACTCACGGCCAAAGAGAACCTGGTTTGCTACTGAAAGGGAGAAGAAACTTTTGGCAGCAGCGGCTAAAgtaagcatatctgaaattcttgtgtacttctttgggcgagatggacaggtctggtgcagtggtgagaagccttcatac-tgagccaaaggtcctgtgtttg
upper sequence: Vv18s0001g14540.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GRMZM5G804064_T01 (Zea mays), 5'ss of exon 15
TGAAAACATGATTGCCCATAAGGATGATATCTACTCACGCCCTAAAAGAACCTGGTTTGCAACAGAAAAGGAGAAGAAGTCTGTGGCAAAGGCAGCAAAGgtaatttcatattgcaccattgt-tgtttatttgtattcatttgtaagtctatatataatgttgtatatgttttgtctgtgagttg-gcatttccatattct
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AGAAAATATGATAGCTCATAAGGATGAGATATACTCACGGCCAAAGAGAACCTGGTTTGCTACTGAAAGGGAAAAGAAGCTTTTGGTAGCAGCTGCTAAAgtaagcatatctgaaattcttgtgcacttctttgggcaagacgttatgcatttat-tcttctaatttaatatttttttgcctattgcactttcacgcatgc-
upper sequence: Vv18s0001g14540.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA18G11950.1 (Glycine max), 5'ss of exon 15
TGAAAACATGATTGCCCATAAGGATGATATCTACTCACGCCCTAAAAGAACCTGGTTTGCAACAGAAAAGGAGAAGAAGTCTGTGGCAAAGGCAGCAAAGgtaatttcatattgcaccattgttgtttatttgtattcatttgtaagtctatatataatgttgtatatgttttgtctgtgagt-tggcatttccatattct--------
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TGAAAACATGATTGCACATAGGGAAGAGATCTTTTCCCGCCCCAAAAGAACCTGGTTTGTCACAGAGAAGGAGAAAAAGCTTGCTTCAAAAGCATCCAAGgta---caatattgtttcatc-ttgctaaaatg-----atttctcaaattactggcatttattttcctattttacaatggagcattatacttgagaaatctaagaatat
upper sequence: Vv18s0001g14540.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA09G15220.1 (Glycine max), 5'ss of exon 15
TGAAAACATGATTGCCCATAAGGATGATATCTACTCACGCCCTAAAAGAACCTGGTTTGCAACAGAAAAGGAGAAGAAGTCTGTGGCAAAGGCAGCAAAGgta-------atttcatattgcaccattgttgt------ttatttgtattcatttg--taagtctatatataatgttgtatatgttttgtctgtgagt-tggcatttccatattct-------------------------------------------------------------------
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CGAAAACATGATTGCACATAGGGAAGAGATCTTTTCCCGCCCCAAAAGAACCTGGTTTGTCACAGAGAAGGAGAAAAAGCTTGCTGCAAAAGCATCCAAGgtacaatattatttcatcttgttaaaatgatttctcaaattactggcatttattttcctattttagaatggaacattatacttgagaaatctaagaatattttgactcgggaatagggataaattgtgtcttgacagtccgcacaaggtctctctatattactgtattgcatttccaaattag
upper sequence: Vv18s0001g14540.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA02G25240.1 (Glycine max), 5'ss of exon 15
TGAAAACATGATTGCCCATAAGGATGATATCTACTCACGCCCTAAAAGAACCTGGTTTGCAACAGAAAAGGAGAAGAAGTCTGTGGCAAAGGCAGCAAAGgtaatttcatattgcaccattgttgtttatttgtattcatttgtaagtctatatataatgttgtatatgttttgtctgtgagttggcatttccatattct--------
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CGAAAACATGATTGCACATAGGGAAGAGATCTTTTCCCGCCCCAAAAGAACCTGGTTTGTCACAGAGAAGGAGAAAAAGCTTGCTGCAAAAGCATCCAAGgta---caatattgtttcatc-ttgctaaaatgatttctcaaattactg-gcatttattttcctat---tttagaatggagcattatacttgagaaatctaagaatatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|349812869|gb|FQ410511.1|FQ410511EST: CCTGGTTTGCAACAGAAAAGGAGAAGAAGTCTGTGGCAAACGCAGCAAAG GATTCTCTAGAAAAGGAAAATGGTTCTGGGAATAATGTAATCAGTGCC
genomic: CCTGGTTTGCAACAGAAAAGGAGAAGAAGTCTGTGGCAAAGGCAGCAAAGgtaatttcat ... cttgtgacagGATTCTCTAGAAAAGGAAAATGGTTCTGGGAATAATGTAATCAGTGCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAAAACATGATTGCCCATAAGGATGATATCTACTCACGCCCTAAAAGAACCTGGTTTGCAACAGAAAAGGAGAAGAAGTCTGTGGCAAAGGCAGCAAAGgtaatttcatattgcaccattgttgtttatttgtattcatttgtaagtctatatataatgttgtatatgttttgtctgtgagttggcatttccatattct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG