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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGGTCATGCCAATGGTAATAAAACGGGATCCAATGACGATGACGCCAATGATGATGATTTGGGTATTTTGGACATTGATGAAAATGACAACAAAACTGgtaatctgttttttggtgtgccttcatcttcccttcatttttagggctgttcatctgttcggtccacatcgagttcatccgaattatgtgaaattctgcttctgatatttctcaaattatatcagttcaataagattatttattcttgtag

Basic information

species Vitis vinifera
transcript Vv18s0001g11700.t01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g11700.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA17G36540.1 (Glycine max), 5'ss of exon 15
GGGGGTCATGCCAATGGTAATAAAACGGGATCCAATGACGATGACGCCAATGATGATGATTTGGGTATTTTGGACATTGATGAAAATGACAACAAAACTGgtaatc-tgttttttggtgtgccttcatcttcccttcatttttagggctgttcatctgttcggtccacatcgagttcatccgaattatgtgaaattctgcttctgatatttctcaaattatatcagttcaataagattatttattcttgtag
   | || | |    |||  |   |  ||   ||| |  |   | |   |||||||||||||||| ||| ||||||||||||| ||||||| |||| |||||| || |   |     |  ||    |  ||  ||  | | | |||  | |  || |  ||  |     |  |||||          |||  |||| |  ||| |  ||||  | | || |  || |||  ||                   
CTTGTTCCTCCTGGAGGTGTTGTTAATGGCAACAAAGCTGGATATGATGATGATGATGATTTGGGAATTATGGACATTGATGAGAATGACAGCAAATCTGgtactcatacctgactttcagcaaatagtttttctgtactgtcaggtttat--atttaatctattatagtttagttccctt------tgtataatttt--ttcaggaattttaccatttcttcca-ttctgtag------------------

upper sequence: Vv18s0001g11700.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA09G18840.1 (Glycine max), 5'ss of exon 15
GGGGGTCATGCCAATGGTAATAAAACGGGATCCAATGACGATGACGCCAATGATGATGATTTGGGTATTTTGGACATTGATGAAAATGACAACAAAACTGgtaatctgttttttggtgtgccttcatcttcccttcatttttagggctgttcatctgttcggtccacatcgagttcatccgaattatgtgaaattctgcttctgatatttctcaaattatatcagttcaataagattatttattcttgtag
   | || | |    |||  |   |  ||   ||| |  |   | |   |||||||||||||||| ||| ||||||||||||| ||||||| |||| |||||| ||   |   ||   | ||   |    || |||   | ||  |       | | ||   || |       ||  | |   || | | || ||    ||| |   |||  | | || |  |  ||   ||                   
CTTGTTCCTCCTGGAGGTGTTGTTAATGGCAACAAAGCTGGATATGATGATGATGATGATTTGGGAATTATGGACATTGATGAGAATGACAGCAAATCTGgtactca--tacctgactttccgcaaatagcctttc---tgtacagtcaagtttatatttaatctattatagtttagttccctttgtatcaattt----ttcaggacttttaccatttcttccttttttgtag------------------

upper sequence: Vv18s0001g11700.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA04G03710.1 (Glycine max), 5'ss of exon 15
---GGGGGTCATGCCAATGGTAATAAAACGGGATCCAATGACGATGACGCCAATGATGATGATTTGGGTATTTTGGACATTGATGAAAATGACAACAAAACTGgtaatctgttttttggtgtgccttcatcttcccttcatttttagggctgttcatctgttcggtccacatcgagttcatccgaattatgtgaaattctgcttctgatatttctcaaattatatcagttcaataagattatttattcttgtag
         | ||   ||||||||||||| |||  ||||||| |  |    ||||||||||||||||| ||| ||||||||||||| |||||||  ||| ||||||   ||| |     |        ||  |   || | |||||    | |       ||    |  |   |  || ||     |   |||| ||      |   ||| ||     |||   |||  |  | |                   
GTTCCCTCACTTGTTGATGGTAATAAAACTGGACACAATGACCAGAAA---AATGATGATGATTTGGGAATTATGGACATTGATGAGAATGACAGTAAATCTGgta-catgtatcactttcaagaaatattctttttttacttttaactttat------atttaaactcctatggttttatttttctatggtgagatcaattgttccataatttgagcatttcttcatctttacag------------------

upper sequence: Vv18s0001g11700.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: AT1G47550.1 (Arabidopsis thaliana), 5'ss of exon 15
GGGGGTCATGCCAATGGTAATAAAACGGGATCC---AATGACGATGACGCCAATGATGATGATTTGGGTATTTTGGACATTGATGAAAATGACAACAAAACTGgtaatctgttttttggtgtgccttcatcttcccttcatttttagggctgttcatctgttcggtccacatcgagttcatccgaattatgtgaaattctgcttctgatatttctcaaattatatcagttcaataagattatttattcttgtag
   |||  || ||||| ||| ||||     |||   ||||||||||      |||||||||||||||| ||  ||||||||||||||| |||||| ||| ||||||| ||     |  |  |||| |||      |||    |  |    |  |||| |  |     |  ||   |||| |   |   |    | ||||   || |   |                                            
---GGTGCTGGCAATGATAAGAAAAGCCAGTCCAACAATGACGATGGTAATGATGATGATGATTTGGGGATCATGGACATTGATGAAACTGACAAGAAACCTGgtaaactaaaact--gcttgccatcagtaaagctttcgctaca----tcctcatattataaagtctaat--ggttc-tgaaagcaaaacaatattccaatttttgcag-------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30305614|gb|CB982408.1|CB982408
EST:     TGATGATGATTTGGGTATTTTGGACATTGATGAAAATGACAACAAAACTG                         GGCAAAA-TTCTGCA
genomic: TGATGATGATTTGGGTATTTTGGACATTGATGAAAATGACAACAAAACTGgtaatctgtt ... attcttgtagG-CAAAAATTCTGCA
EST: gi|161708046|gb|FC056095.1|FC056095
EST:     TGATGATGATTTGGGTATTTTGGACATTGATGAAAATGACAACAAAACTG                         GCAAAAATTCTGCAGAGCTGGGAGCATTAAATGAATCTCTTCA
genomic: TGATGATGATTTGGGTATTTTGGACATTGATGAAAATGACAACAAAACTGgtaatctgtt ... attcttgtagGCAAAAATTCTGCAGAGCTGGGAGCATTAAATGAATCTCTTCA
EST: gi|7593728|gb|AW707979.1|AW707979
EST:     GATTTGGGTATTTTGGACATTGATGAAAATGACAACAAAACTG                         GCAAAAATTCTGCAGAGCTGGGAGCATTAAATGAATCTCTTCAGGATTTGC
genomic: GATTTGGGTATTTTGGACATTGATGAAAATGACAACAAAACTGgtaatctgtt ... attcttgtagGCAAAAATTCTGCAGAGCTGGGAGCATTAAATGAATCTCTTCAGGATTTGC