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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGATTGGCCCTCAAAGAGGATGGTGTTCAACTTGGTCCTGCTCTACTATTCTTTGGATGTCGGAATCGCCGGATGgtaaggataatgctacagaagttcagacaaataatcttttgaattctttgatcccctggaataagatttcctaatcttgatctctgttatag

Basic information

species Vitis vinifera
transcript Vv18s0001g07630.t01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g07630.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA02G37850.1 (Glycine max), 5'ss of exon 15
GAAAGATTGGCCCTCAAAGAGGATGGTGTTCAACTTGGTCCTGCTCTACTATTCTTTGGATGTCGGAATCGCCGGATGgtaaggataatgctacagaagttcagacaaataatcttttgaattctttgatcccctggaataagatttcctaatcttgatctctgttatag
|||||||||| ||||||||||||||| |||||||||||||||||  |||| |||||||||||| ||||||| |  |||||||    | ||||      | |   |     |  ||  || | | || ||     ||    | ||||| |   | |  |            
GAAAGATTGGTCCTCAAAGAGGATGGCGTTCAACTTGGTCCTGCATTACTCTTCTTTGGATGTAGGAATCGACAAATGgtaaaataattgcttggtgggctttca-----atcctgatggagttttagaa----tgatccaggattttcctgtgtatag-----------

upper sequence: Vv18s0001g07630.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA14G36070.1 (Glycine max), 5'ss of exon 15
GAAAGATTGGCCCTCAAAGAGGATGGTGTTCAACTTGGTCCTGCTCTACTATTCTTTGGATGTCGGAATCGCCGGATGgtaaggataatgctacagaagttcagacaaataatcttttgaattctttgatcccctggaataagatttcctaatcttgatctctgttatag
|||||||||||||||||||||||||  |||||||||||||||||  |||| |||||||||||| ||||||| |  |||||||    | ||||      | |     ||        | || || |   ||   | || ||    ||||||     |              
GAAAGATTGGCCCTCAAAGAGGATGCCGTTCAACTTGGTCCTGCATTACTCTTCTTTGGATGTAGGAATCGACAAATGgtaaaataattgcttggtgggcttttttaatc--ctgatggagttttagaatgatccgggat----tttcctgtgtatag------------

upper sequence: Vv18s0001g07630.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA04G10200.1 (Glycine max), 5'ss of exon 15
GAAAGATTGGCCCTCAAAGAGGATGGTGTTCAACTTGGTCCTGCTCTACTATTCTTTGGATGTCGGAATCGCCGGATGgtaaggataatgctacagaagttcagacaaataatcttttgaattctttgatcccctggaataagatttcctaatcttgatctctgttatag
|||||||| || |||||||||||||||||||||||||| |||||  |||| |||||||||||| ||||||| || |||||||    |   ||      | |     | ||   |   ||  || |  || |   |    |  ||||| | | |  || | | ||| ||||
GAAAGATTTGCGCTCAAAGAGGATGGTGTTCAACTTGGCCCTGCAATACTCTTCTTTGGATGTAGGAATCGTCGAATGgtaaattaatcactctttgtgctt---tagat--ccaaatgggttttccgagcaatt----tctgattttcca-ttatgttgtttgt-atag

upper sequence: Vv18s0001g07630.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA06G10180.2 (Glycine max), 5'ss of exon 15
GAAAGATTGGCCCTCAAAGAGGATGGTGTTCAACTTGGTCCTGCTCTACTATTCTTTGGATGTCGGAATCGCCGGATGgtaaggataatgctaca-gaagttcaga--caaataatcttttga---attctttgatcccctggaataagatttcctaatcttgatctctgttatag
|||||||| ||||||||||||| |||||||||||  || |||||  |||| |||||||||||| ||||||| ||  ||||||    | || |    |   || |||  |||||    |||      | | | ||||  ||   |||| | ||   ||                   
GAAAGATTTGCCCTCAAAGAGGCTGGTGTTCAACAAGGCCCTGCAATACTCTTCTTTGGATGTAGGAATCGTCGATTGgtaaattaattgatctttgtgctttagatccaaatgggttttcagagcaatttctgatttccc--aatatgtttgtatag------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30125241|gb|CB910580.1|CB910580
EST:     TTCAACTTGGTCCTGCTCTACTATTCTTTGGATGTCGGAATCGCCGGATG                         GATTTCATTTATGAGGATGAACTCAATAATTTTGTTGAACAAGGTATTCTG
genomic: TTCAACTTGGTCCTGCTCTACTATTCTTTGGATGTCGGAATCGCCGGATGgtaaggataa ... tctgttatagGATTTCATTTATGAGGATGAACTCAATAATTTTGTTGAACAAGGTATTCTG
EST: gi|27584661|gb|CB007356.1|CB007356
EST:     TTCAACTTGGTCCTGCTCTACTATTCTTTGGATGTCGGAATCGCCGGATG                         GATTTCATTTATGAGGATGAACTCAATAATTTTGTTGAACAAGGTATTCTG
genomic: TTCAACTTGGTCCTGCTCTACTATTCTTTGGATGTCGGAATCGCCGGATGgtaaggataa ... tctgttatagGATTTCATTTATGAGGATGAACTCAATAATTTTGTTGAACAAGGTATTCTG
EST: gi|30125286|gb|CB910625.1|CB910625
EST:     TTCAACTTGGTCCTGCTCTACTATTCTTTGGATGTCGGAATCGCCGGATG                         GATTTCATTTATGAGGATGAACTCAATAATTTTGTTGAACAAGGTATTCTG
genomic: TTCAACTTGGTCCTGCTCTACTATTCTTTGGATGTCGGAATCGCCGGATGgtaaggataa ... tctgttatagGATTTCATTTATGAGGATGAACTCAATAATTTTGTTGAACAAGGTATTCTG