Sequence
atgc intronic sequence ATGC exonic sequenceTTATGGGGGCATGATGGAAGTCAAGGATCAAGAAATTACACTTGATGATTTGTATTGCCTTAATCTCAGCAAACTTGATGAATGGAAGTGCATCATACCGgtttgttgcatttccttcccttttacatgattcttgctacttgtgcttgctacttgtcaagtcttaactaaatcttgaactgatcattaagatcaaatgt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g10130.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: LOC_Os04g40740.4 (Oryza sativa), 5'ss of exon 8
TTATGGGGGCATGATGGAAGTCAAGGATCAAGAAATTACACTTGATGATTTGTATTGCCTTAATCTCAGCAAACTTGATGAATGGAAGTGCATCATACCGgtttgttgcatttccttcccttttacatgat-tcttgctacttg--tgct--tgctacttgtcaagtcttaactaaatcttgaactgatcattaagatcaaatgt-----------------------------------------------
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ATATGGAGGAATGATGGAATTGAAAGATAGAGAAATTACTCTTGATGATATGTATTCACTTAACCTTAGCAAACTAGATGAGTGGAAGTGTATCATACCGgtcagttgcagattggccccttctttttgccattttgttgtttaactgatagtgttgtttatttcaatcagagataacagaaaattatctgttatcattttttactattcacattggtttctgaacttgccttactcacctttcttatgcag
upper sequence: Vv17s0000g10130.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GRMZM2G100815_T01 (Zea mays), 5'ss of exon 12
TTATGGGGGCATGATGGAAGTCAAGGATCAAGAAATTACACTTGATGATTTGTATTGCCTTAATCTCAGCAAACTTGATGAATGGAAGTGCATCATACCGgtttgttgcat-ttccttcccttttacatgattcttgctacttgtgcttgctacttgtcaagtcttaa-ctaaatcttgaactgatcattaagatcaaatgt----------------------------------------------------------
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GTATGGAGGAATGATGGAAGTGAAAGATAGAGAAATTACTCTTGATGATCTATATTCACTTAACCTTAGCAAACTTGATGAGTGGAAGTGTATCATATCCgtgagttacaaactggatctattttctaccatt-ttattatcaattaacattattatatatatttcaatctaaataccagacaaacaaatgaacttaaagagtcatattacaatcattactgtttgtggagaagtcatcattactatcctttttattcag
upper sequence: Vv17s0000g10130.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA06G18170.1 (Glycine max), 5'ss of exon 15
TTATGGGGGCATGATGGAAGTCAAGGATCAAGAAATTACACTTGATGATTTGTATTGCCTTAATCTCAGCAAACTTGATGAATGGAAGTGCATCATACCGgtttgttgcatttccttcccttttacatgattcttgctact-tgtgcttgctacttgtcaagtcttaactaaatcttga--actgatcattaagatcaaatgt
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ATATGGTGGCATGATGGAGATTAAAGATCAAGAAATCACTCTTGATGATTTGTATTCTTTGAACCTTAGCAAACTTGATGAATGGAAGTGCATTATACCGgtttgttattttttct-ctagttaactagctttttaccaatacatgcatatgttctataccatagttatcaatcatagatagctgtgtgtagcagctaact--
upper sequence: Vv17s0000g10130.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA04G36770.1 (Glycine max), 5'ss of exon 15
TTATGGGGGCATGATGGAAGTCAAGGATCAAGAAATTACACTTGATGATTTGTATTGCCTTAATCTCAGCAAACTTGATGAATGGAAGTGCATCATACCGgtttgttgcatttccttcccttttacatgattcttgctacttgtgcttgc-tacttgtcaagtcttaacta--aatcttgaac--tgatcattaagatcaaatgt
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ATATGGTGGCATGATGGAGATTAAAGATCAAGAAATCACTCTTGATGATTTGTATTCTTTGAACCTTAGCAAACTTGATGAATGGAAATGCATTATACCGgtttgtt--attttttctcaagttgactagctttt--tacctatacatgcatatgttctataccataggtatcaatcatgaacagtggtatgtagcagctgact-
upper sequence: Vv17s0000g10130.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: AT5G50310.1 (Arabidopsis thaliana), 5'ss of exon 15
TTATGGGGGCATGATGGAAGTCAAGGATCAAGAAATTACACTTGATGATTTGTATTGCCTTAATCTCAGCAAACTTGATGAATGGAAGTGCATCATACCGgtttgttgcatttccttccct-tttacatgattcttgctacttgtgcttgctac-ttgtcaagtcttaactaaatcttgaactgatcattaagatcaaatgt
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ATATGGTGGCATGATGGAGATAAAAGATAAAGAAGTTACTCTTGATGATTTGTATTCGCTTAATCTTAGCAAACTTGACGAGTGGAAGTGTATCATTCCGgtttgtttgacaccaatctccatttttctgtcttttgatatcagttgataaaatattgtgtagac--aataagtttctgggtatgtctttacaacag-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161717269|gb|FC067514.1|FC067514EST: TGTATTGCCTTAATCTCAGCAAACTTGATGAATGGAAGTGCATCATACCG GCTTCTAAATCTGAGTGGATAGAAGCTTCAGAGGAAGAAGATGAGGATGAA
genomic: TGTATTGCCTTAATCTCAGCAAACTTGATGAATGGAAGTGCATCATACCGgtttgttgca ... tggacttcagGCTTCTAAATCTGAGTGGATAGAAGCTTCAGAGGAAGAAGATGAGGATGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTATGGGGGCATGATGGAAGTCAAGGATCAAGAAATTACACTTGATGATTTGTATTGCCTTAATCTCAGCAAACTTGATGAATGGAAGTGCATCATACCGgtttgttgcatttccttcccttttacatgattcttgctacttgtgcttgctacttgtcaagtcttaactaaatcttgaactgatcattaagatcaaatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aactaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agatcaaa