1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GAAGTGATTGGGAAATCAGTGAACGGGACTACTTATGCTGGACTAAGGGCAAGAACAACAGGAGCTCCACAGAATCACTGgtatgtagaagatccaacacttcctttcttgcctgcttcacaatgacattgtcaaaagtacgtcaatatatgtggaaaacaatggttttgtggcag
species | Vitis vinifera |
transcript | Vv17s0000g05800.t01 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: ACTTATGCTGGACTAAGGGCAAGAACAACAGGAGCTCCACAGAATCACTG GTTTGGGCC-GACAGNGGACCCAAGAGGGGCAGGAATTGGGACCCCAGAAGEST: gi|110428757|gb|EC995236.1|EC995236
genomic: ACTTATGCTGGACTAAGGGCAAGAACAACAGGAGCTCCACAGAATCACTGgtatgtagaa ... tttgtggcagGTTTGGACCAG-CAGGGGACCCAAGAGGGGCAGGAATTGGGACGCCAGAAG
EST: ACTTATGCTGGACTAAGGGCAAGAACAACAGGAGCTCCACAGAATCACTG GTTTGGACCAGCAGGGGACCCAAGAGGGGCAGGAATTGGGACGCCAGAAGCEST: gi|110380514|gb|EC945785.1|EC945785
genomic: ACTTATGCTGGACTAAGGGCAAGAACAACAGGAGCTCCACAGAATCACTGgtatgtagaa ... tttgtggcagGTTTGGACCAGCAGGGGACCCAAGAGGGGCAGGAATTGGGACGCCAGAAGC
EST: ACTTATGCTGGACTAAGGGCAAGAACAACAGGAGCTCCACAGAATCACTG GTTTGGACCAGCAGGGGACCCAAGAGGGGCAGGAATTGGGACGCCAGAAGCEST: gi|26264607|gb|CA815670.1|CA815670
genomic: ACTTATGCTGGACTAAGGGCAAGAACAACAGGAGCTCCACAGAATCACTGgtatgtagaa ... tttgtggcagGTTTGGACCAGCAGGGGACCCAAGAGGGGCAGGAATTGGGACGCCAGAAGC
EST: ACTTATGCTGGACTAAGGGCAAGAACAACAGGAGCTCCACAGAATCACTG GTTTGGGCCAGCAGGGGACCCAAGAGGGGCAGGAATTGGGACCCCAGAAGCEST: gi|27582713|gb|CB005408.1|CB005408
genomic: ACTTATGCTGGACTAAGGGCAAGAACAACAGGAGCTCCACAGAATCACTGgtatgtagaa ... tttgtggcagGTTTGGACCAGCAGGGGACCCAAGAGGGGCAGGAATTGGGACGCCAGAAGC
EST: ACTTATGCTGGACTAAGGGCAAGAACAACAGGAGCTCCACAGAATCACTG GTTTGGACCAGCAGGGGACCCAAGAGGGGCAGGAATTGGGACGCCAGAAGCEST: gi|351025255|gb|FQ434268.1|FQ434268
genomic: ACTTATGCTGGACTAAGGGCAAGAACAACAGGAGCTCCACAGAATCACTGgtatgtagaa ... tttgtggcagGTTTGGACCAGCAGGGGACCCAAGAGGGGCAGGAATTGGGACGCCAGAAGC
EST: ACTTATGCTGGACTAAGGGCAAGAACAACAGGAGCTCCACAGAATCACTG GTTTGGACCAGCAGGGGACCCAAGAGGGGCAGGAATTGGGACGCCAGAAGC
genomic: ACTTATGCTGGACTAAGGGCAAGAACAACAGGAGCTCCACAGAATCACTGgtatgtagaa ... tttgtggcagGTTTGGACCAGCAGGGGACCCAAGAGGGGCAGGAATTGGGACGCCAGAAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGTGATTGGGAAATCAGTGAACGGGACTACTTATGCTGGACTAAGGGCAAGAACAACAGGAGCTCCACAGAATCACTGgtatgtagaagatccaacacttcctttcttgcctgcttcacaatgacattgtcaaaagtacgtcaatatatgtggaaaacaatggttttgtggcag
- - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT