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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGTTGCTCAGGCACAAGCAATTGCAACACTGGAGGCATTACCTCAGCTTTCATTTTCTGTTGTTAATGCTCTGAATAATTTCCTCAGCGATTCGAAGgttttaatactttcagaggttcaatttctttccatgcattggtgtttagtgaaatgcaattttaaaatttcttctatgttttcaag

Basic information

species Vitis vinifera
transcript Vv17s0000g04200.t01
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv17s0000g04200.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA17G13080.2 (Glycine max), 5'ss of exon 15
TGTTGTTGCTCAGGCACAAGCAATTGCAACACTGGAGGCATTACCTCAGCTTTCATTTTCTGTTGTTAATGCTCTGAATAATTTCCTCAGCGATTCGAAGgttttaatactttcagaggttcaatttctttccatgcattggtgtttagtgaaatgcaattttaaaatttcttctatgtt-ttcaag
|||| ||||||||||||||||||||||| | || |||||||  || ||||| ||||||||| |||||||||| || |||||||| ||||| || || |||||  || ||||||| |   |  | ||||  |   ||  ||      |    || |   || |   | | | ||   | |   |||||
TGTTATTGCTCAGGCACAAGCAATTGCAGCCCTTGAGGCATCCCCACAGCTATCATTTTCTATTGTTAATGCCCTAAATAATTTTCTCAGTGACTCCAAGgtgata-tactttctgtaatatattttcaataattgtttttaaacctgt--aactaatatctgggagtcttttggttctaactcaag

upper sequence: Vv17s0000g04200.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA05G07920.1 (Glycine max), 5'ss of exon 15
TGTTGTTGCTCAGGCACAAGCAATTGCAACACTGGAGGCATTACCTCAGCTTTCATTTTCTGTTGTTAATGCTCTGAATAATTTCCTCAGCGATTCGAAGgttttaatactttcagaggttcaatttctttccatgcattggtgtttagtgaaatgcaattttaaaatttctt--ctatgttttcaag
|||| ||||||||||||||||||||||| | || |||||||  || ||||| ||||||||| |||| ||||| || || ||||| ||||| || || |||||  |   | |||| |   |  | ||||  ||  ||  ||      |    || |   || |   | | | ||   | |   | ||  
TGTTATTGCTCAGGCACAAGCAATTGCAGCCCTTGAGGCATCCCCACAGCTATCATTTTCTATTGTAAATGCCCTAAACAATTTTCTCAGTGACTCAAAGgtgatttca-tttctgttatgtattttcaatcattgtttttaaacctgt--aactaatatctgggagtcttttggttctaactccag-

upper sequence: Vv17s0000g04200.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: AT1G73960.1 (Arabidopsis thaliana), 5'ss of exon 15
TGTTGTTGCTCAGGCACAAGCAATTGCAACACTGGAGGCATTACCTCAGCTTTCATTTTCTGTTGTTAATGCTCTGAATAATTTCCTCAGCGATTCGAAGgttttaatactttcagaggttcaatttctttccatgcattggtgtttagtgaaatgcaattttaaaatttcttctatgttttcaag
|||||||||||||||||||||||||||  |||| || || |||   || |  || |||||  |||| ||||| || || ||| ||||||  || || |||||||      | ||    || |  ||||| |  |  || |  ||   |   |  |    | |  ||| |  |  | ||   |  ||
TGTTGTTGCTCAGGCACAAGCAATTGCGTCACTTGAAGCCTTAAAACAACACTCCTTTTCCATTGTGAATGCACTCAAAAATGTCCTCACTGACTCCAAGgtttagtccgtctcttgtgtactttttctctaaaaccagtt-tgaagatgaagttcttgtctccaaaatattattgtgacatatag