Sequence
atgc intronic sequence ATGC exonic sequenceACTGGAAAAAACGAAAGCTGACAATGTCAAACTCTATGGGAAGATTCGTTATGTCCAGGATTATAATCTTGAGAAAGTAGTTTCTAGAGGATCAAAGAAGgtatcttatcgcaattctatgcttattaaattatggttgtcatttcctctttcttaaatttcatcttctttaatcatgttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g03970.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: LOC_Os03g50300.1 (Oryza sativa), 5'ss of exon 14
ACTGGAAAAAACGAAAGCTGACAATGTCAAACTCTATGGGAAGATTCGTTATGTCCAGGATTATAATCTTGAGAAAGTAGTTTCTAGAGGATCAAAGAAGgtatcttatcgcaattctatgcttattaaattatggttgtcatttcctctttcttaaatttcatcttcttta-atcatgttcag---
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ATTGGAAAAAACTAAAGCAGATAATGTTCAACTGTATGGGAAGATTCGTTACGTGCAGGACTACAGCCATGAGAAGATTGTTTCCAGAGGACCAAAGAAGgt---ttatacacatcct---ttcaagggaaaatagcaaaatccacagcattctagcttttgacctttgttacattgtgttttgcag
upper sequence: Vv17s0000g03970.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GRMZM2G011219_T02 (Zea mays), 5'ss of exon 14
ACTGGAAAAAACGAAAGCTGACAATGTCAAACTCTATGGGAAGATTCGTTATGTCCAGGATTATAATCTTGAGAAAGTAGTTTCTAGAGGATCAAAGAAGgtatcttatcgcaattctatgcttattaaattatggttgtcatttcctctttcttaaatttcatcttctttaatcatgttcag
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ACTGGAAAAAACTAAAGCTGATAATGTGCAACTGTATGGAAAGATTCGATATGTCCAAGACTATAGCCACGACAAGATTGTTTCCAGGGGACCAAAAAAGgt---ttatcacaaatctttttatgtaaatttgt-----ctctccgcattttcttgcatttgacctttgttgtgttattgcag
upper sequence: Vv17s0000g03970.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA07G09890.3 (Glycine max), 5'ss of exon 15
ACTGGAAAAAACGAAAGCTGACAATGTCAAACTCTATGGGAAGATTCGTTATGTCCAGGATTATAATCTTGAGAAAGTAGTTTCTAGAGGATCAAAGAAGgtatcttat-cgcaattctatgcttattaaattatggttgtcatttcctctttcttaaatttcatctt---ctttaatcatgttcag--------------
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ACTGGAAAAGAGCAAAGCTGATAATGTCAAACTATATGGGAAGATTCGTTATGTACAAGACTATAATCATGAGAAAGTGATTTCTAGGGGTTCTAAAAAGgtttttaatgtgttcttaaaacatcattctatttcagtcttcaagataacctttttcccttttaccctgaactcaagatttgtttgtgattatatgtacag
upper sequence: Vv17s0000g03970.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA09G31920.1 (Glycine max), 5'ss of exon 17
ACTGGAAAAAACGAAAGCTGACAATGTCAAACTCTATGGGAAGATTCGTTATGTCCAGGATTATAATCTTGAGAAAGTAGTTTCTAGAGGATCAAAGAAGgtatcttatc----------gcaattctatgcttattaaattatggttgtcatttcctcttt---cttaaatttcatcttctttaa----tcatgttcag
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ACTGGAAAAGAGCAAAGTTGATAATGTCAAACTATACGGGAAGATTCGTTATGTACAAGACTATAATCATGAGAAAGTGGTTTCTAGGGGTTCTAAAAAGgtttttaatttgtgcttaaaacatcactctatttcattcttcaagataacttttttcccttttaccctgaactcagatttatttgtgattttttgttcag
upper sequence: Vv17s0000g03970.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: AT3G18480.1 (Arabidopsis thaliana), 5'ss of exon 15
ACTGGAAAAAACGAAAGCTGACAATGTCAAACTCTATGGGAAGATTCGTTATGTCCAGGATTATAATCTTGAGAAAGTAGTTTCTAGAGGATCAAAGAAGgtatcttatcgcaattctatgctt--attaaattatggttgtc-----atttcctctttcttaaatttcatcttctttaatcatgttcag
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ATTGGAGAAGACCAAAGCAGACAACGTCAAACTCTATGGGAAAATCCGTTATGTCCAAGACTATAACCATGATAAAGTTGTTTCCCGAGGATCGAAAAAGgtatttgttttctgcgatacatttcccttgaaccttttctgtctcgtgatcgggttttttccatggttgatatcgttttccaat-ctcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30125770|gb|CB911109.1|CB911109EST: ATGTCCAGGATTATAATCTTGAGAAAGTAGTTTCTAGAGGATCAAAGAAG CATTCAGAAGATCTTGAGAGTGGTTTCAGCTCAGATGTTGAATCCAAGTAC
genomic: ATGTCCAGGATTATAATCTTGAGAAAGTAGTTTCTAGAGGATCAAAGAAGgtatcttatc ... tcatgttcagCATTCAGAAGATCTTGAGAGTGGTTTCAGCTCAGATGTTGAATCCAAGTAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTGGAAAAAACGAAAGCTGACAATGTCAAACTCTATGGGAAGATTCGTTATGTCCAGGATTATAATCTTGAGAAAGTAGTTTCTAGAGGATCAAAGAAGgtatcttatcgcaattctatgcttattaaattatggttgtcatttcctctttcttaaatttcatcttctttaatcatgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG