Sequence
atgc intronic sequence ATGC exonic sequenceCGCTGTAAGCTTTGGACTAGTTGCTTCTGAAGCAGTAGCTGATAGAAGATCTTCTTTCCAAATTAAACGATGGGAAGCTTATGCAAGATTATACAAAAAGgttgacttttttttttctcttccctatttttatactgtgatcctagttgcttggtcttgtcagatgaagctttgtcagtgaaagaaatttggagttttta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0039g02260.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: LOC_Os02g47120.1 (Oryza sativa), 5'ss of exon 14
CGCTGTAAGCTTTGGACTAGTTGCTTCTGAAGCAGTAGCTGATAGAAGATCTTCTTTCCAAATTAAACGATGGGAAGCTTATGCAAGATTATACAAAAAGgttgacttttttttttctcttccctatttttatactgtgatcctagttgcttggtcttgtcagatgaagctttgtcagtgaaagaaatttggagttttta
||||| || ||||| || | ||||||||||| |||||||| ||||||||| ||||| | ||||| |||||| ||||||| ||| | ||||||||||| | | | ||| | || || | | | | ||||| | | | | | ||||
TGCTGTCAGTTTTGGCCTTGAAGCTTCTGAAGCTGTAGCTGAACGAAGATCTTGCTTCCAGTTGAAACGCTGGGAAACTTATGCTAGAGTTTACAAAAAGgtcaagctgataattttttttggtgatgggcactccttatgagaaaatgcttctatctaatattcaagcttatttcag----------------------
upper sequence: Vv16s0039g02260.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA11G01410.1 (Glycine max), 5'ss of exon 5
---CGCTGTAAGCTTTGGACTAGTTGCTTCTGAAGCAGTAGCTGATAGAAGATCTTCTTTCCAAATTAAACGATGGGAAGCTTATGCAAGATTATACAAAAAGgttgacttttttttttctcttccctatttttatactgtgatcctagttgcttggtcttgtcagatgaagctttgtcagtgaaagaaatttggagttttta---
||||| |||||||| |||| |||||||||||||||||||| |||||||||| |||| ||||| |||||||||||||||||| || | |||||||||||| || ||| | | | | | | | ||| ||| || | || || ||| | | || | | | | | | |||
AGTTGCTGTGAGCTTTGGGCTAGCAGCTTCTGAAGCAGTAGCTGACAGAAGATCTT---TCCAGATTAAGCGATGGGAAGCTTATGCACGACTTTACAAAAAGgtttgctgctttaatcaacatatattgatatgtgacttgagtatagatg---gctcatgatgaatggtttatggaaaggacatggattgactaataattacac
upper sequence: Vv16s0039g02260.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA01G43940.1 (Glycine max), 5'ss of exon 5
---CGCTGTAAGCTTTGGACTAGTTGCTTCTGAAGCAGTAGCTGATAGAAGATCTTCTTTCCAAATTAAACGATGGGAAGCTTATGCAAGATTATACAAAAAGgttgacttttttttttctcttccctatttttat-actgtgatcctagttgcttggtcttgtcagatgaagctttgtcagtgaaagaaatttggagttttta------
||||| |||||||| |||| |||||||||||||||||||| |||||||||| |||| ||||| |||||||||||||||||| || | |||||||||||| || || || | | |||| ||| ||||| ||| | || || |||||| | || || || |||| | ||
AGTTGCTGTGAGCTTTGGGCTAGCAGCTTCTGAAGCAGTAGCTGACAGAAGATCTT---TCCAGATTAAGCGATGGGAAGCTTATGCACGACTGTACAAAAAGgtttgctgcttaaattaaca--catattaatattgatgtgacttgagtatagatggctcgt--gatgaa---tggtttatggaaagggcatggattgactaataattMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71866418|gb|DT015473.1|DT015473EST: CTTCTTTCCAAATTAAACGATGGGAAGCTTATGCAAGATTATACAAAAAG GTGTCTGATGAGTGGTGGTTTGAACCAGGACATGGGGATTGGTGTACTTGC
genomic: CTTCTTTCCAAATTAAACGATGGGAAGCTTATGCAAGATTATACAAAAAGgttgactttt ... ggctttgcagGTGTCTGATGAGTGGTGGTTTGAACCAGGACATGGGGATTGGTGTACTTGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGCTGTAAGCTTTGGACTAGTTGCTTCTGAAGCAGTAGCTGATAGAAGATCTTCTTTCCAAATTAAACGATGGGAAGCTTATGCAAGATTATACAAAAAGgttgacttttttttttctcttccctatttttatactgtgatcctagttgcttggtcttgtcagatgaagctttgtcagtgaaagaaatttggagttttta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaaa