Sequence
atgc intronic sequence ATGC exonic sequenceTGCAGTGATAAGCTGGGCCTTAGTCTTGAATTGGGTTCATTTGTGGCTGGGGTTATGATATCTACGACTGACTTTGCGCAACATACTTTGGACCAGgtaaatcaaggccactgatattattccattcatattgatgtatttatcacaatagcccaaacaaatttcatatattattctttctttttatttattaatt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0022g02060.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GRMZM2G040158_T03 (Zea mays), 5'ss of exon 15
TGCAGTGATAAGCTGGGCCTTAGTCTTGAATTGGGTTCATTTGTGGCTGGGGTTATGATATCTACGACTGACTTTGCGCAACATACTTTGGACCAGgtaa-atcaaggccactgatattattccattcatattgatgt-atttatcacaatagcccaaacaaatttcatatattattctttctttttatttattaatt--
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TGCAGTGACTATTGTGGATTGAGTCTTGAGTTGGGGTCATTTCTTGCTGGTGTTATGATATCAACCACAGATTTTGCTCATCATACTATGGAGCAGgtggtattctgaattcagttcacattgtact----ttggtgtgactagttgacataaccaatactctggaaatgaactgtttcttttttttccttctttacatc
upper sequence: Vv16s0022g02060.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: GLYMA09G27940.1 (Glycine max), 5'ss of exon 16
TGCAGTGATAAGCTGGGCCTTAGTCTTGAATTGGGTTCATTTGTGGCTGGGGTTATGATATCTACGACTGACTTTGCGCAACATACTTTGGACCAGgtaaatcaaggccactgatattattccattcatatt-gatgtatttatcacaatagcccaaacaaatttcatatattattctttctttttatttattaatt--
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TGCAGTGATAAGCTTGGCCTTAGTCTCGAGTTGGGTTCATTTATGGCTGGTGTTATGATTTCCACAACAGACTTTGCTCAACATACTTTGGACCAGgtatcactca-taactgataacttctgacatgtgtcagacttatttttctttgcatacatatagtactttccttaatagt--ttctttgcacacatttatctt
upper sequence: Vv16s0022g02060.t01 (Vitis vinifera), 5'ss of exon 15
lower sequence: AT5G51710.1 (Arabidopsis thaliana), 5'ss of exon 15
TGCAGTGATAAGCTGGGCCTTAGTCTTGAATTGGGTTCATTTGTGGCTGGGGTTATGATATCTACGACTGACTTTGCGCAACATACTTTGGACCAGgtaaatcaaggccactgatattattccattcatattgatgtatttatcacaatagcccaaacaaatttcatatattattctttctttttatttattaatt
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TGCAGTGACAAGCTGGGTCTTAGTCTTGAGTTGGGATCATTTGTGGCTGGCGTTATGTTGTCTACGACTGAATTTGCTCAACATACACTAGAGCAGgta--ttgattctaaactcaggtcgcttttgctttgcgagtacgtggtacaaaatgaagtcttaaggtggtggaatctcccttactttgtgatgtag---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110426017|gb|EC992414.1|EC992414EST: TGGGGTTATGATATCTACGACTGACTTTGCGCAACATACTTTGGACCAG GTTGAACCGATCCGGAACCTATTTGCAGCTCTCTTCCTTTCAAGTATTGGA
genomic: TGGGGTTATGATATCTACGACTGACTTTGCGCAACATACTTTGGACCAGgtaaatcaag ... tatgttctagGTTGAACCGATCCGGAACCTATTTGCAGCTCTCTTCCTTTCAAGTATTGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCAGTGATAAGCTGGGCCTTAGTCTTGAATTGGGTTCATTTGTGGCTGGGGTTATGATATCTACGACTGACTTTGCGCAACATACTTTGGACCAGgtaaatcaaggccactgatattattccattcatattgatgtatttatcacaatagcccaaacaaatttcatatattattctttctttttatttattaatt
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